JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM185B_chr2_120212479_120228400	0/0	t0033	4870	1	0	1	0	0	0	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM185B_chr2_120212479_120228400	0/0	t0034	4870	1	0	0	0	0	1	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM185B_chr2_120212479_120228400	0/0	t0035	4870	1	0	1	0	0	0	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM185B_chr2_120212479_120228400	0/0	t0036	4870	1	0	0	0	1	0	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM185B_chr2_120212479_120228400	0/0	t0037	4870	1	0	0	1	0	0	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM185B_chr2_120212479_120228400	0/0	t0038	4870	1	1	0	0	0	0	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM186_chr16_8790180_8802639	0/1	t0001	798	177	27	31	95	7	16	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0002	798	107	10	14	64	3	16	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0003	798	68	1	11	46	2	8	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	1/0	t0004	798	61	28	25	2	1	4	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0005	798	24	24	0	0	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0006	798	3	3	0	0	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0007	798	2	2	0	0	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0008	798	2	2	0	0	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0009	798	2	0	0	2	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0010	798	2	0	2	0	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0011	798	1	0	0	1	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0012	798	1	0	0	0	0	1	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0013	798	1	0	1	0	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0014	798	1	0	0	0	1	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0015	798	1	0	0	0	0	1	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0016	798	1	0	0	1	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0017	798	1	1	0	0	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	t0018	798	1	0	0	1	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM187_chrX_153967754_153988194	0/0	t0001	667	180	60	21	89	0	10	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	1/1	t0002	667	79	3	18	36	9	11	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	t0003	667	12	11	1	0	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	t0004	667	2	0	0	0	0	2	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	t0005	667	2	0	1	1	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	t0006	667	1	1	0	0	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	t0007	667	1	0	1	0	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	t0008	667	1	1	0	0	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	t0009	667	1	0	1	0	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	t0010	667	1	0	1	0	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	t0011	667	1	0	0	0	0	1	copy fasta	TMEM187	chrX	153967754	153988194
TMEM18_chr2_658877_682406	0/0	t0001	5821	155	18	30	81	7	19	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/1	t0002	5821	89	0	16	59	4	9	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0003	5765	28	1	4	20	0	3	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0004	5765	20	2	10	1	3	4	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0005	5821	18	6	4	0	0	8	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0006	5822	13	13	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0007	5821	12	11	1	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0008	5821	8	8	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0009	5765	7	7	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0010	5766	7	7	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0011	5820	6	0	0	5	1	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0012	5821	5	5	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0013	5765	5	0	0	0	2	3	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0014	5822	5	3	0	1	0	1	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0015	5821	5	0	4	0	1	0	copy fasta	TMEM18	chr2	658877	682406