JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM18_chr2_658877_682406	0/0	t0016	5765	5	0	5	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0017	5821	4	3	1	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0018	5820	3	0	0	2	0	1	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0019	5821	2	2	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0020	5821	2	0	2	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0021	5822	2	2	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0022	5821	2	0	0	2	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0023	5821	2	0	0	2	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0024	5820	2	0	2	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0025	5822	2	2	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0026	5821	2	0	2	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0027	5822	2	0	0	2	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0028	5821	1	1	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0029	5765	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0030	5765	1	0	0	0	0	1	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0031	5821	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0032	5821	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0033	5801	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0034	5822	1	1	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0035	5820	1	1	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0036	5821	1	0	1	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0037	5821	1	1	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0038	5821	1	1	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0039	5821	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0040	5821	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0041	5821	1	0	1	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0042	5821	1	0	1	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0043	5821	1	0	0	0	0	1	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0044	5821	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0045	5821	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0046	5821	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0047	5820	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0048	5765	1	1	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0049	5765	1	1	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	1/0	t0050	5765	1	0	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0051	5821	1	1	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0052	5765	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0053	5765	1	1	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0054	5821	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0055	5821	1	0	0	1	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM18_chr2_658877_682406	0/0	t0056	5820	1	1	0	0	0	0	copy fasta	TMEM18	chr2	658877	682406
TMEM190_chr19_55371826_55383246	1/1	t0001	72	336	94	62	118	14	46	copy fasta	TMEM190	chr19	55371826	55383246
TMEM191B_chr22_18522802_18535573	1/0	t0001	294	26	7	6	10	0	2	copy fasta	TMEM191B	chr22	18522802	18535573
TMEM191B_chr22_18522802_18535573	0/0	t0002	288	2	2	0	0	0	0	copy fasta	TMEM191B	chr22	18522802	18535573
TMEM191B_chr22_18522802_18535573	0/0	t0003	294	1	1	0	0	0	0	copy fasta	TMEM191B	chr22	18522802	18535573
TMEM191C_chr22_21462387_21474935	1/1	t0001	188	417	93	70	192	18	42	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	t0002	188	3	3	0	0	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM192_chr4_165065608_165117860	0/0	t0001	9139	55	0	10	39	1	5	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0002	9141	44	6	19	14	2	3	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0003	9142	11	0	1	10	0	0	copy fasta	TMEM192	chr4	165065608	165117860