JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM192_chr4_165065608_165117860	0/0	t0004	9141	7	0	3	3	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0005	9139	7	7	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0006	9138	7	3	1	0	2	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0007	9139	6	6	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0008	9139	5	1	2	0	2	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0009	9139	5	1	2	2	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0010	9141	4	0	0	4	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0011	9141	4	0	0	4	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0012	9137	4	0	3	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/1	t0013	9139	4	0	1	0	1	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0014	9135	4	0	0	4	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0015	9140	4	1	2	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0016	9141	3	0	0	3	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0017	9141	3	0	1	2	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0018	9139	3	0	0	3	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0019	9139	3	0	0	3	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0020	9139	3	3	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0021	9143	3	3	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0022	9143	3	3	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0023	9136	3	3	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0024	9138	3	0	0	3	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0025	9139	2	0	0	2	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0026	9139	2	0	0	2	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0027	9141	2	0	0	0	0	2	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0028	9143	2	0	0	2	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0029	9139	2	0	1	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0030	9141	2	0	2	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0031	9138	2	2	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0032	9143	2	2	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0033	9139	2	0	0	0	1	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0034	9139	2	0	0	0	0	2	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0035	9139	2	0	0	0	0	2	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0036	9140	2	0	0	1	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0037	9138	2	0	1	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0038	9139	2	2	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0039	9139	2	2	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0040	9139	2	2	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0041	9139	2	0	0	2	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0042	9139	2	0	0	2	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0043	9138	2	1	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0044	9139	2	2	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0045	9136	2	2	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0046	9138	2	1	1	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0047	9134	2	2	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0048	9138	2	2	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0049	9137	2	2	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0050	9138	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0051	9139	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0052	9141	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0053	9141	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860