JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM192_chr4_165065608_165117860	0/0	t0054	9141	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0055	9141	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0056	9141	1	0	1	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0057	9141	1	0	1	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0058	9142	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0059	9141	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0060	9139	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0061	9141	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0062	9141	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0063	9140	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0064	9141	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0065	9141	1	0	1	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0066	9141	1	0	0	0	1	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0067	9142	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0068	9143	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0069	9139	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0070	9138	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0071	9139	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0072	9139	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0073	9141	1	0	1	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0074	9141	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0075	9140	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0076	9140	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0077	9139	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0078	9139	1	0	0	0	1	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0079	9139	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0080	9140	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0081	9139	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0082	9140	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0083	9139	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0084	9140	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0085	9139	1	0	0	0	1	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0086	9140	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0087	9140	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0088	9141	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0089	9139	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0090	9138	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0091	9137	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0092	9139	1	0	1	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0093	9139	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0094	9139	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0095	9139	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0096	9137	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0097	9144	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0098	9140	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0099	9139	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0100	9140	1	0	1	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0101	9139	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0102	9140	1	0	1	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0103	9138	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860