JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM192_chr4_165065608_165117860	0/0	t0104	9139	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0105	9139	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0106	9139	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0107	9139	1	0	0	1	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0108	9138	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0109	9137	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0110	9137	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0111	9135	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	1/0	t0112	9138	1	0	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0113	9138	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0114	9139	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0115	9138	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0116	9139	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0117	9137	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0118	9144	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0119	9137	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0120	9137	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0121	9140	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0122	9138	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0123	9138	1	0	1	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0124	9137	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0125	9139	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0126	9135	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0127	9138	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0128	9137	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0129	9137	1	1	0	0	0	0	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0130	9139	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM192_chr4_165065608_165117860	0/0	t0131	9140	1	0	0	0	0	1	copy fasta	TMEM192	chr4	165065608	165117860
TMEM196_chr7_19714315_19778617	1/0	t0001	3735	64	17	23	7	4	12	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/1	t0002	3735	64	0	9	41	0	13	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0003	3735	52	15	9	22	2	4	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0004	3735	34	16	4	14	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0005	3735	27	8	5	12	1	1	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0006	3735	12	0	2	6	1	3	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0007	3735	8	0	0	8	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0008	3735	8	0	0	8	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0009	3736	8	7	1	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0010	3737	7	0	4	0	2	1	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0011	3735	5	0	0	5	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0012	3735	5	0	0	5	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0013	3735	3	0	1	2	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0014	3735	3	0	3	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0015	3735	2	2	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0016	3735	2	0	1	0	1	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0017	3735	2	2	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0018	3735	2	2	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0019	3737	2	0	0	2	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0020	3735	2	2	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0021	3735	2	0	0	2	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0022	3735	1	0	0	1	0	0	copy fasta	TMEM196	chr7	19714315	19778617