JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM196_chr7_19714315_19778617	0/0	t0023	3735	1	0	0	0	0	1	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0024	3737	1	0	1	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0025	3735	1	0	0	1	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0026	3735	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0027	3735	1	0	0	1	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0028	3736	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0029	3737	1	0	1	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0030	3735	1	0	0	1	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0031	3735	1	0	0	1	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0032	3735	1	0	0	1	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0033	3735	1	0	0	0	1	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0034	3735	1	0	0	1	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0035	3735	1	0	0	1	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0036	3735	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0037	3765	1	0	0	0	0	1	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0038	3735	1	0	1	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0039	3735	1	0	0	1	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0040	3735	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0041	3735	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0042	3735	1	0	0	1	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0043	3735	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0044	3735	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0045	3735	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0046	3735	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0047	3736	1	0	1	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0048	3735	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0049	3735	1	0	0	1	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0050	3735	1	0	0	0	0	1	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0051	3735	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0052	3735	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0053	3735	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0054	3735	1	0	0	1	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	t0055	3735	1	0	0	0	0	1	copy fasta	TMEM196	chr7	19714315	19778617
TMEM198_chr2_219539028_219555595	1/1	t0001	1131	390	91	78	159	14	46	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	t0002	1131	5	0	0	5	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	t0003	1131	3	0	0	3	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	t0004	1131	2	0	0	2	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	t0005	1131	1	0	0	1	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	t0006	1131	1	1	0	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	t0007	1131	1	0	0	1	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	t0008	1131	1	0	0	1	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM199_chr17_28352647_28368683	0/0	t0001	2456	175	47	38	63	7	20	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0002	2456	79	12	9	49	2	7	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/1	t0003	2456	65	14	19	12	3	16	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0004	2456	10	10	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0005	2457	7	2	1	3	0	1	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0006	2456	7	2	4	0	1	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	1/0	t0007	2456	6	0	3	0	1	1	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0008	2456	5	0	0	5	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0009	2456	3	0	3	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683