JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM199_chr17_28352647_28368683	0/0	t0010	2456	1	1	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0011	2456	1	0	0	1	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0012	2456	1	0	0	1	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0013	2457	1	0	0	1	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0014	2456	1	0	1	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0015	2456	1	0	0	1	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0016	2456	1	1	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0017	2456	1	0	0	1	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0018	2456	1	1	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0019	2456	1	1	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0020	2456	1	1	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0021	2456	1	0	0	1	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0022	2456	1	0	0	0	0	1	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0023	2456	1	1	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	t0024	2456	1	1	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM19_chr12_71681082_71710047	0/0	t0001	4632	65	0	2	52	0	11	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0002	4655	44	2	10	31	0	1	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	1/0	t0003	4652	41	4	12	13	5	6	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0004	4656	31	0	5	25	0	1	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/1	t0005	4653	29	3	11	7	4	3	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0006	4652	10	3	0	5	0	2	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0007	4632	9	9	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0008	4630	9	9	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0009	4651	8	8	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0010	4635	8	8	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0011	4638	7	6	1	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0012	4649	5	0	2	1	0	2	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0013	4657	5	2	1	2	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0014	4632	5	5	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0015	4654	5	1	0	3	1	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0016	4632	4	0	2	2	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0017	4654	4	0	1	3	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0018	4652	4	1	1	0	1	1	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0019	4637	4	3	1	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0020	4651	4	0	1	2	1	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0021	4653	4	2	2	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0022	4654	3	3	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0023	4632	3	0	0	3	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0024	4637	3	0	0	3	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0025	4653	3	0	0	3	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0026	4652	3	0	0	3	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0027	4630	3	0	1	0	2	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0028	4650	2	0	1	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0029	4649	2	0	0	0	0	2	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0030	4635	2	0	0	0	0	2	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0031	4652	2	0	0	2	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0032	4650	2	0	0	0	0	2	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0033	4640	2	2	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0034	4639	2	2	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0035	4655	2	1	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047