JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM19_chr12_71681082_71710047	0/0	t0036	4654	2	0	0	0	0	2	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0037	4653	2	0	0	2	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0038	4634	2	0	0	0	2	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0039	4631	2	2	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0040	4652	2	0	0	0	0	2	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0041	4632	2	2	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0042	4639	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0043	4653	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0044	4649	1	0	0	0	0	1	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0045	4652	1	0	0	0	0	1	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0046	4657	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0047	4633	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0048	4632	1	0	0	0	0	1	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0049	4623	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0050	4655	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0051	4663	1	0	0	0	0	1	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0052	4656	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0053	4655	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0054	4655	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0055	4651	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0056	4638	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0057	4636	1	0	1	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0058	4655	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0059	4653	1	0	0	0	0	1	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0060	4651	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0061	4652	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0062	4637	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0063	4638	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0064	4633	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0065	4631	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0066	4638	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0067	4657	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0068	4654	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0069	4652	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0070	4653	1	0	1	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0071	4653	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0072	4654	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0073	4652	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0074	4650	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0075	4652	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0076	4641	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0077	4636	1	0	1	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0078	4635	1	0	0	0	0	1	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0079	4632	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0080	4685	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0081	4654	1	0	0	0	0	1	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0082	4652	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0083	4632	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0084	4655	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	t0085	4654	1	0	1	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047