JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM19_chr12_71681082_71710047	0/0	t0086	4632	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM200A_chr6_130361017_130448067	1/1	t0001	1758	167	30	44	67	8	16	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0002	1759	58	0	8	41	0	9	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0003	1758	45	16	2	23	0	4	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0004	1758	27	25	2	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0005	1758	2	0	0	0	0	2	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0006	1758	2	0	0	2	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0007	1758	2	2	0	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0008	1758	2	2	0	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0009	1758	1	0	0	1	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0010	1758	1	0	0	1	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0011	1758	1	1	0	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0012	1758	1	0	0	0	0	1	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0013	1758	1	0	0	0	0	1	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0014	1758	1	1	0	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0015	1759	1	0	0	0	0	1	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0016	1759	1	1	0	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	t0017	1758	1	0	0	1	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200B_chr1_29114429_29128903	0/0	t0001	1544	202	31	46	82	14	29	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	1/1	t0002	1545	129	26	22	68	0	11	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0003	1544	39	29	6	0	2	2	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0004	1545	8	0	0	8	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0005	1545	7	1	2	3	0	1	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0006	1546	4	0	1	3	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0007	1546	3	0	0	3	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0008	1544	3	2	1	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0009	1544	3	0	0	2	0	1	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0010	1545	2	0	0	2	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0011	1544	1	1	0	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0012	1544	1	1	0	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0013	1545	1	0	0	1	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0014	1544	1	0	0	1	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0015	1544	1	0	0	1	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0016	1544	1	0	0	1	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0017	1545	1	0	0	1	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0018	1545	1	1	0	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0019	1544	1	1	0	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	t0020	1545	1	1	0	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200C_chr18_5877072_5900522	0/0	t0001	8707	61	2	4	50	0	5	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0002	8707	52	5	17	27	1	2	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0003	8705	34	0	10	23	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0004	8705	24	1	5	15	2	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0005	8707	11	0	1	5	2	3	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0006	8708	9	1	4	1	2	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0007	8706	8	1	5	0	0	2	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0008	8708	7	0	0	6	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0009	8707	7	0	4	3	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0010	8705	7	0	2	4	1	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0011	8706	6	6	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0012	8706	6	6	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522