JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM200C_chr18_5877072_5900522	0/0	t0013	8706	6	0	0	1	0	5	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0014	8707	6	4	0	1	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0015	8706	6	6	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0016	8705	6	0	4	0	0	2	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0017	8708	6	0	0	4	0	2	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0018	8706	5	0	1	0	3	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0019	8705	5	0	2	3	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0020	8707	4	0	2	0	0	2	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0021	8706	4	4	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0022	8706	4	2	1	0	1	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0023	8706	4	4	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0024	8707	3	1	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/1	t0025	8706	3	0	2	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0026	8708	3	0	0	2	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0027	8704	3	0	0	1	0	2	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0028	8706	3	3	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0029	8706	3	2	1	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0030	8706	3	1	2	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0031	8706	3	2	0	0	1	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0032	8706	3	0	2	0	1	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0033	8706	2	2	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0034	8706	2	2	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0035	8704	2	0	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0036	8706	2	0	2	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0037	8707	2	2	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0038	8705	2	0	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0039	8705	2	0	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0040	8705	2	0	0	1	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0041	8708	2	0	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0042	8706	2	2	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0043	8707	2	0	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0044	8706	2	1	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0045	8705	2	1	0	0	1	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0046	8708	2	0	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0047	8708	2	0	0	1	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0048	8704	2	1	0	0	1	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0049	8707	2	0	0	0	0	2	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0050	8706	2	2	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0051	8706	2	0	1	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0052	8706	2	0	0	1	1	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0053	8705	2	0	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0054	8705	2	0	1	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0055	8708	2	0	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0056	8708	2	0	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0057	8705	2	0	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0058	8706	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0059	8707	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0060	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0061	8707	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0062	8705	1	0	1	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522