JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM200C_chr18_5877072_5900522	0/0	t0063	8706	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0064	8707	1	0	1	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0065	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0066	8707	1	0	1	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0067	8707	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0068	8707	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0069	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0070	8707	1	0	1	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0071	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0072	8707	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0073	8707	1	0	1	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0074	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0075	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0076	8707	1	0	1	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0077	8707	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0078	8705	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0079	8707	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0080	8708	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0081	8704	1	0	1	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0082	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0083	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0084	8707	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0085	8704	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0086	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0087	8707	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0088	8684	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0089	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0090	8707	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0091	8707	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0092	8707	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0093	8707	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0094	8705	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0095	8705	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0096	8706	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0097	8706	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0098	8707	1	0	0	0	1	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0099	8708	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0100	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0101	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0102	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0103	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0104	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0105	8726	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0106	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0107	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0108	8707	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0109	8708	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0110	8707	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0111	8708	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0112	8708	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522