JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM200C_chr18_5877072_5900522	0/0	t0113	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0114	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0115	8707	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0116	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0117	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0118	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0119	8704	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0120	8704	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0121	8706	1	0	1	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0122	8707	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0123	8705	1	0	1	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0124	8708	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0125	8707	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0126	8708	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	1/0	t0127	8714	1	0	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0128	8707	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0129	8706	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	t0130	8706	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM201_chr1_9583911_9619877	0/1	t0001	1815	103	27	33	16	6	20	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	1/0	t0002	1815	93	12	6	56	4	14	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0003	1815	83	13	5	61	0	4	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0004	1815	27	24	1	0	0	2	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0005	1815	9	9	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0006	1815	8	2	0	4	0	2	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0007	1815	8	0	2	6	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0008	1815	2	1	1	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0009	1815	2	0	0	2	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0010	1815	1	0	0	1	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0011	1815	1	0	0	1	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0012	1815	1	0	0	1	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0013	1815	1	0	0	1	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0014	1815	1	0	0	1	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0015	1815	1	1	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0016	1815	1	1	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0017	1815	1	1	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	0/0	t0018	1815	1	1	0	0	0	0	copy fasta	TMEM201	chr1	9583911	9619877
TMEM202_chr15_72393305_72413367	1/1	t0001	497	390	91	69	178	12	38	copy fasta	TMEM202	chr15	72393305	72413367
TMEM202_chr15_72393305_72413367	0/0	t0002	497	4	4	0	0	0	0	copy fasta	TMEM202	chr15	72393305	72413367
TMEM202_chr15_72393305_72413367	0/0	t0003	497	2	1	1	0	0	0	copy fasta	TMEM202	chr15	72393305	72413367
TMEM203_chr9_137199082_137210648	1/1	t0001	1157	359	80	64	159	15	39	copy fasta	TMEM203	chr9	137199082	137210648
TMEM203_chr9_137199082_137210648	0/0	t0002	1157	14	0	3	11	0	0	copy fasta	TMEM203	chr9	137199082	137210648
TMEM203_chr9_137199082_137210648	0/0	t0003	1157	11	10	1	0	0	0	copy fasta	TMEM203	chr9	137199082	137210648
TMEM203_chr9_137199082_137210648	0/0	t0004	1157	6	0	3	0	1	2	copy fasta	TMEM203	chr9	137199082	137210648
TMEM203_chr9_137199082_137210648	0/0	t0005	1157	1	0	0	1	0	0	copy fasta	TMEM203	chr9	137199082	137210648
TMEM203_chr9_137199082_137210648	0/0	t0006	1157	1	0	0	1	0	0	copy fasta	TMEM203	chr9	137199082	137210648
TMEM203_chr9_137199082_137210648	0/0	t0007	1157	1	0	1	0	0	0	copy fasta	TMEM203	chr9	137199082	137210648
TMEM203_chr9_137199082_137210648	0/0	t0008	1157	1	0	0	0	0	1	copy fasta	TMEM203	chr9	137199082	137210648
TMEM204_chr16_1528666_1560568	0/0	t0001	1153	148	34	14	83	1	16	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	1/1	t0002	1153	145	16	37	67	5	18	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0003	1153	51	28	3	12	2	6	copy fasta	TMEM204	chr16	1528666	1560568