JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM204_chr16_1528666_1560568	0/0	t0004	1153	34	0	6	26	0	2	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0005	1153	13	12	1	0	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0006	1153	10	0	1	9	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0007	1153	5	0	3	0	2	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0008	1153	4	2	2	0	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0009	1153	2	0	0	2	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0010	1153	1	0	1	0	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0011	1153	1	0	1	0	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0012	1153	1	1	0	0	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0013	1153	1	1	0	0	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0014	1153	1	1	0	0	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0015	1153	1	0	1	0	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0016	1153	1	1	0	0	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM204_chr16_1528666_1560568	0/0	t0017	1153	1	0	0	1	0	0	copy fasta	TMEM204	chr16	1528666	1560568
TMEM205_chr19_11337778_11351268	1/1	t0001	687	360	93	66	157	12	30	copy fasta	TMEM205	chr19	11337778	11351268
TMEM205_chr19_11337778_11351268	0/0	t0002	687	4	0	0	0	2	2	copy fasta	TMEM205	chr19	11337778	11351268
TMEM205_chr19_11337778_11351268	0/0	t0003	687	1	1	0	0	0	0	copy fasta	TMEM205	chr19	11337778	11351268
TMEM205_chr19_11337778_11351268	0/0	t0004	687	1	0	0	1	0	0	copy fasta	TMEM205	chr19	11337778	11351268
TMEM207_chr3_190423655_190454901	1/1	t0001	1033	328	27	65	196	12	26	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0002	1029	111	58	18	18	4	13	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0003	1029	6	5	1	0	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0004	1033	4	0	0	4	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0005	1029	4	0	0	4	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0006	1029	3	0	0	0	0	3	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0007	1029	2	2	0	0	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0008	1029	2	2	0	0	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0009	1029	1	0	0	0	0	1	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0010	1033	1	0	0	1	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0011	1033	1	0	0	1	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0012	1033	1	1	0	0	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0013	1033	1	1	0	0	0	0	copy fasta	TMEM207	chr3	190423655	190454901
TMEM207_chr3_190423655_190454901	0/0	t0014	1033	1	0	0	0	0	1	copy fasta	TMEM207	chr3	190423655	190454901
TMEM208_chr16_67222130_67234278	1/1	t0001	255	255	90	56	72	9	26	copy fasta	TMEM208	chr16	67222130	67234278
TMEM208_chr16_67222130_67234278	0/0	t0002	255	3	0	2	0	1	0	copy fasta	TMEM208	chr16	67222130	67234278
TMEM208_chr16_67222130_67234278	0/0	t0003	255	2	2	0	0	0	0	copy fasta	TMEM208	chr16	67222130	67234278
TMEM209_chr7_130159713_130210406	1/1	t0001	1770	180	44	43	61	10	20	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	t0002	1771	108	23	21	50	2	12	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	t0003	1769	41	19	9	5	0	8	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	t0004	1771	2	2	0	0	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	t0005	1770	2	0	2	0	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	t0006	1771	1	0	1	0	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	t0007	1771	1	1	0	0	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM209_chr7_130159713_130210406	0/0	t0008	1772	1	1	0	0	0	0	copy fasta	TMEM209	chr7	130159713	130210406
TMEM210_chr9_137165858_137177056	1/1	t0001	147	404	92	78	170	16	46	copy fasta	TMEM210	chr9	137165858	137177056
TMEM210_chr9_137165858_137177056	0/0	t0002	147	1	1	0	0	0	0	copy fasta	TMEM210	chr9	137165858	137177056
TMEM210_chr9_137165858_137177056	0/0	t0003	147	1	1	0	0	0	0	copy fasta	TMEM210	chr9	137165858	137177056
TMEM212_chr3_171838349_171864318	1/0	t0001	1297	245	60	50	102	12	20	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/0	t0002	1297	119	11	11	87	1	9	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/1	t0003	1297	52	14	8	9	5	15	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/0	t0004	1297	5	4	1	0	0	0	copy fasta	TMEM212	chr3	171838349	171864318