JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM212_chr3_171838349_171864318	0/0	t0005	1297	4	1	3	0	0	0	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/0	t0006	1297	3	3	0	0	0	0	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/0	t0007	1297	3	0	3	0	0	0	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/0	t0008	1297	1	1	0	0	0	0	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/0	t0009	1297	1	1	0	0	0	0	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/0	t0010	1297	1	0	0	1	0	0	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/0	t0011	1297	1	0	0	1	0	0	copy fasta	TMEM212	chr3	171838349	171864318
TMEM212_chr3_171838349_171864318	0/0	t0012	619	1	1	0	0	0	0	copy fasta	TMEM212	chr3	171838349	171864318
TMEM213_chr7_138792994_138811759	0/1	t0001	3803	175	10	35	106	5	18	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	1/0	t0002	3802	121	22	26	46	7	19	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0003	3804	26	4	2	19	0	1	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0004	3808	17	17	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0005	3809	13	5	5	0	2	1	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0006	3803	12	1	3	5	2	1	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0007	3804	6	1	2	2	0	1	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0008	3803	6	0	0	6	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0009	3807	5	0	0	5	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0010	3803	4	1	0	0	2	1	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0011	3802	4	3	1	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0012	3806	3	3	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0013	3807	3	2	1	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0014	3801	2	0	0	0	0	2	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0015	3803	2	0	2	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0016	3807	2	2	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0017	3807	2	2	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0018	3806	2	2	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0019	3805	2	0	0	2	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0020	3804	2	0	0	2	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0021	3804	2	0	0	1	0	1	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0022	3805	2	0	0	2	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0023	3803	2	0	0	2	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0024	3803	2	0	0	1	0	1	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0025	3802	2	2	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0026	3803	2	0	0	2	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0027	3803	2	2	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0028	3802	2	1	0	0	0	1	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0029	3802	1	0	1	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0030	3807	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0031	3808	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0032	3808	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0033	3807	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0034	3807	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0035	3807	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0036	3807	1	0	0	1	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0037	3804	1	0	0	1	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0038	3805	1	0	0	1	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0039	3803	1	0	0	1	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0040	3805	1	0	0	1	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0041	3803	1	0	1	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0042	3803	1	0	0	0	0	1	copy fasta	TMEM213	chr7	138792994	138811759