JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM213_chr7_138792994_138811759	0/0	t0043	3804	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0044	3804	1	0	0	1	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0045	3803	1	0	1	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0046	3803	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0047	3803	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0048	3803	1	0	0	1	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0049	3802	1	0	0	1	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0050	3802	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0051	3802	1	0	0	1	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0052	3801	1	0	0	1	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0053	3802	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0054	3804	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0055	3805	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0056	3803	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0057	3803	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0058	3803	1	1	0	0	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM213_chr7_138792994_138811759	0/0	t0059	3804	1	0	0	1	0	0	copy fasta	TMEM213	chr7	138792994	138811759
TMEM214_chr2_27027965_27046694	1/1	t0001	909	348	87	78	140	14	27	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	t0002	909	3	0	2	0	0	1	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	t0003	909	3	0	0	3	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	t0004	909	1	0	0	1	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	t0005	909	1	1	0	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	t0006	909	1	0	0	1	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	t0007	909	1	1	0	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	t0008	909	1	0	0	1	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	t0009	909	1	1	0	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM215_chr9_32778540_32794201	0/1	t0001	4635	269	30	52	151	7	28	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0002	4635	32	21	10	0	0	1	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0003	4635	26	3	1	18	1	3	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0004	4635	18	6	9	0	2	1	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0005	4635	12	8	4	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0006	4635	9	9	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0007	4635	7	0	0	7	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	1/0	t0008	4635	6	3	0	0	0	2	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0009	4635	5	1	2	0	0	2	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0010	4635	4	0	0	3	1	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0011	4634	3	2	1	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0012	4634	2	2	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0013	4635	2	0	0	0	1	1	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0014	4634	2	2	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0015	4635	1	1	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0016	4635	1	1	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0017	4635	1	1	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0018	4635	1	1	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0019	4635	1	1	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0020	4635	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0021	4635	1	0	1	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0022	4635	1	1	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0023	4635	1	1	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0024	4635	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201