JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM215_chr9_32778540_32794201	0/0	t0025	4635	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0026	4635	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0027	4635	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0028	4635	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0029	4635	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0030	4635	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0031	4635	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0032	4635	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	t0033	4635	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM216_chr11_61387587_61403846	0/1	t0001	616	176	16	35	97	6	21	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	1/0	t0002	616	55	32	9	4	2	7	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	t0003	616	24	22	2	0	0	0	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	t0004	616	6	6	0	0	0	0	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	t0005	616	5	5	0	0	0	0	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	t0006	616	1	1	0	0	0	0	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	t0007	616	1	0	0	1	0	0	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	t0008	616	1	1	0	0	0	0	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	t0009	616	1	1	0	0	0	0	copy fasta	TMEM216	chr11	61387587	61403846
TMEM217B_chr6_37207181_37263144	1/1	t0001	881	219	72	54	54	8	29	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	t0002	881	33	3	13	8	2	7	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	t0003	881	7	7	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	t0004	881	5	5	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	t0005	881	3	3	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	t0006	881	2	0	0	0	0	2	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	t0007	881	1	0	1	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/1	t0001	1374	127	14	33	53	5	21	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	1/0	t0002	1374	58	25	13	11	2	6	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0003	1374	34	3	13	9	2	7	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0004	1374	30	20	7	0	1	2	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0005	1374	9	9	0	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0006	1374	5	5	0	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0007	1374	5	5	0	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0008	1374	3	3	0	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0009	1374	3	3	0	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0010	1374	2	2	0	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0011	1374	2	0	0	0	0	2	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0012	1374	1	0	1	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0013	1374	1	1	0	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0014	1374	1	0	1	0	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	0/0	t0015	1374	1	0	0	1	0	0	copy fasta	TMEM217	chr6	37207181	37263144
TMEM218_chr11_125089389_125116626	0/0	t0001	3457	104	2	6	88	1	7	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/1	t0002	3458	85	19	21	24	2	18	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	1/0	t0003	3458	80	0	33	34	5	7	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0004	3458	25	1	4	13	3	4	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0005	3457	25	9	2	8	0	6	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0006	3457	19	14	0	5	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0007	3457	15	1	5	8	1	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0008	3457	11	10	1	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0009	3457	11	2	4	0	3	2	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0010	3458	8	8	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626