JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM218_chr11_125089389_125116626	0/0	t0011	3458	6	6	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0012	3458	4	3	1	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0013	3454	4	4	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0014	3457	3	3	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0015	3457	3	3	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0016	3459	3	1	2	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0017	3457	3	0	0	3	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0018	3458	3	0	2	0	0	1	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0019	3457	2	0	0	0	1	1	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0020	3458	2	0	0	0	0	2	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0021	3458	1	1	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0022	3457	1	1	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0023	3457	1	1	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0024	3457	1	0	0	1	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0025	3458	1	0	0	0	0	1	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0026	3458	1	0	1	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0027	3457	1	1	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0028	3458	1	0	1	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0029	3458	1	1	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0030	3457	1	0	0	1	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0031	3458	1	0	1	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0032	3457	1	0	0	1	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0033	3457	1	0	0	1	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0034	3441	1	0	0	1	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0035	3457	1	0	0	1	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0036	3457	1	1	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0037	3457	1	1	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0038	3457	1	0	0	0	0	1	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0039	3457	1	0	0	1	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0040	3457	1	0	0	1	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0041	3457	1	0	0	1	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	t0042	3457	1	1	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM219_chr16_29957079_29978048	1/1	t0001	224	367	91	68	154	14	38	copy fasta	TMEM219	chr16	29957079	29978048
TMEM219_chr16_29957079_29978048	0/0	t0002	224	1	1	0	0	0	0	copy fasta	TMEM219	chr16	29957079	29978048
TMEM220_chr17_10708295_10735023	0/1	t0001	2332	169	13	38	89	8	20	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0002	2339	107	13	21	56	5	12	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0003	2311	35	1	1	31	0	2	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0004	2339	14	14	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0005	2339	11	10	1	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0006	2339	8	8	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0007	2339	6	6	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0008	2340	5	5	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0009	2340	4	4	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0010	2340	4	4	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0011	2340	4	1	0	1	1	1	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0012	2335	4	1	0	3	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0013	2339	3	0	0	2	0	1	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0014	2338	3	2	1	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0015	2338	2	0	0	1	0	1	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0016	2340	2	1	1	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023