JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM220_chr17_10708295_10735023	0/0	t0017	2332	2	0	0	1	0	1	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0018	2332	2	1	1	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0019	2334	2	2	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0020	2337	1	1	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0021	2339	1	1	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0022	2337	1	1	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0023	2339	1	0	0	1	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0024	2338	1	0	1	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0025	2339	1	0	0	1	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0026	2339	1	1	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0027	2339	1	0	1	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0028	2340	1	1	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0029	2334	1	1	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0030	2339	1	0	0	1	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0031	2332	1	0	0	1	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0032	2333	1	0	0	1	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0033	2334	1	1	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0034	2334	1	1	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	t0035	2311	1	0	0	1	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	1/0	t0036	2331	1	0	0	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM221_chr19_17430509_17453668	0/0	t0001	1156	146	27	14	90	2	13	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/1	t0002	1156	119	31	36	32	6	13	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0003	1156	70	13	13	29	3	12	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0004	1156	26	2	5	15	2	2	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0005	1156	23	2	7	11	1	2	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0006	1156	8	7	1	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0007	1156	7	3	0	1	0	3	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	1/0	t0008	1156	6	0	0	2	0	3	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0009	1156	3	1	2	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0010	1156	3	0	1	0	2	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0011	1156	2	2	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0012	1156	2	0	0	2	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0013	1156	2	2	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0014	1156	1	1	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0015	1156	1	0	1	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0016	1156	1	1	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0017	1156	1	1	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	t0018	1156	1	1	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM222_chr1_27317163_27341400	1/0	t0001	970	199	49	42	79	9	19	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/1	t0002	970	90	9	20	44	6	10	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	t0003	970	39	27	6	2	3	1	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	t0004	970	31	5	0	25	0	1	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	t0005	970	3	3	0	0	0	0	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	t0006	970	2	0	0	0	0	2	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	t0007	970	1	0	0	0	0	1	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	t0008	970	1	0	1	0	0	0	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	t0009	970	1	0	1	0	0	0	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	t0010	970	1	0	0	1	0	0	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	t0011	970	1	0	0	0	0	1	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	t0012	970	1	0	0	0	0	1	copy fasta	TMEM222	chr1	27317163	27341400