JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM222_chr1_27317163_27341400	0/0	t0013	970	1	1	0	0	0	0	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	t0014	970	1	0	0	1	0	0	copy fasta	TMEM222	chr1	27317163	27341400
TMEM223_chr11_62784971_62797006	1/1	t0001	665	337	83	63	144	14	31	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	t0002	666	47	1	3	40	2	1	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	t0003	666	11	5	2	4	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	t0004	665	4	4	0	0	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	t0005	665	2	1	0	1	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	t0006	665	2	0	1	0	1	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	t0007	665	1	0	1	0	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	t0008	665	1	0	0	0	1	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	t0009	665	1	0	0	0	0	1	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	t0010	665	1	0	0	1	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	t0011	665	1	1	0	0	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	t0012	665	1	0	0	0	0	1	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	t0013	665	1	1	0	0	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM225B_chr7_99593267_99616045	1/1	t0001	680	328	62	53	157	14	40	copy fasta	TMEM225B	chr7	99593267	99616045
TMEM225B_chr7_99593267_99616045	0/0	t0002	680	26	24	1	1	0	0	copy fasta	TMEM225B	chr7	99593267	99616045
TMEM225B_chr7_99593267_99616045	0/0	t0003	680	5	5	0	0	0	0	copy fasta	TMEM225B	chr7	99593267	99616045
TMEM225B_chr7_99593267_99616045	0/0	t0004	680	2	0	0	2	0	0	copy fasta	TMEM225B	chr7	99593267	99616045
TMEM225B_chr7_99593267_99616045	0/0	t0005	680	1	1	0	0	0	0	copy fasta	TMEM225B	chr7	99593267	99616045
TMEM225_chr11_123877920_123890670	0/0	t0001	464	207	34	37	113	5	18	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	t0002	464	196	24	34	104	8	26	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	t0003	464	33	15	7	7	1	3	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	t0004	464	15	13	1	0	0	1	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	t0005	464	8	7	1	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	t0006	464	1	1	0	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM229A_chr7_124025921_124038067	1/1	t0001	1005	228	42	33	115	8	28	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	t0002	1006	76	11	22	27	6	10	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	t0003	1004	28	18	6	0	2	2	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	t0004	1005	20	4	0	12	0	4	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	t0005	1004	11	10	1	0	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	t0006	1004	1	1	0	0	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229B_chr14_67465269_67493721	1/1	t0001	3557	170	7	32	104	7	18	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0002	3565	53	9	6	31	4	3	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0003	3557	29	0	6	20	1	2	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0004	3557	29	26	3	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0005	3557	24	19	4	0	1	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0006	3557	23	0	10	7	0	6	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0007	3557	13	4	5	1	0	3	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0008	3557	12	1	4	0	2	5	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0009	3557	8	7	1	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0010	3565	8	0	0	8	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0011	3557	7	7	0	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0012	3557	6	0	0	6	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0013	3557	5	0	3	1	0	1	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0014	3574	5	0	0	5	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0015	3557	5	4	1	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0016	3557	4	3	1	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0017	3557	3	0	2	0	1	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0018	3557	3	3	0	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721