JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM229B_chr14_67465269_67493721	0/0	t0019	3557	2	0	0	2	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0020	3557	2	0	0	2	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0021	3540	2	0	0	2	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0022	3557	2	0	0	2	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0023	3557	2	0	1	0	1	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0024	3557	2	2	0	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0025	3557	2	2	0	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0026	3557	1	0	1	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0027	3557	1	0	0	0	0	1	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0028	3557	1	1	0	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0029	3557	1	1	0	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0030	3565	1	0	0	0	0	1	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0031	3557	1	0	0	1	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0032	3557	1	0	0	1	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0033	3557	1	1	0	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0034	3557	1	1	0	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0035	3557	1	0	1	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0036	3557	1	1	0	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0037	3557	1	1	0	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0038	3557	1	0	0	0	1	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0039	3557	1	0	0	1	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0040	3557	1	0	0	1	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0041	3557	1	0	0	1	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0042	3557	1	0	0	0	0	1	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0043	3557	1	0	0	1	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0044	3565	1	0	1	0	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0045	3565	1	0	0	0	0	1	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM229B_chr14_67465269_67493721	0/0	t0046	3557	1	0	0	1	0	0	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM230_chr20_5094850_5118076	0/1	t0001	990	253	12	43	161	10	26	copy fasta	TMEM230	chr20	5094850	5118076
TMEM230_chr20_5094850_5118076	1/0	t0002	990	142	68	30	27	8	8	copy fasta	TMEM230	chr20	5094850	5118076
TMEM230_chr20_5094850_5118076	0/0	t0003	990	8	8	0	0	0	0	copy fasta	TMEM230	chr20	5094850	5118076
TMEM230_chr20_5094850_5118076	0/0	t0004	990	1	0	1	0	0	0	copy fasta	TMEM230	chr20	5094850	5118076
TMEM231_chr16_75531741_75561252	0/0	t0001	3280	64	0	12	42	0	10	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	1/0	t0002	3297	43	5	18	1	6	12	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0003	3297	40	8	4	21	2	5	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0004	3280	25	0	14	10	0	1	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/1	t0005	3301	21	2	4	12	1	1	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0006	3298	17	14	3	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0007	3298	16	6	2	7	0	1	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0008	3298	15	1	5	4	0	5	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0009	3297	9	4	2	1	1	1	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0010	3297	8	0	4	0	3	1	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0011	3280	6	0	0	6	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0012	3280	6	4	2	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0013	3297	6	6	0	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0014	3297	5	5	0	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0015	3302	4	0	0	4	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0016	3298	4	0	2	0	2	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0017	3297	4	0	0	4	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	t0018	3298	4	4	0	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252