JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM235_chr17_78226631_78245987	0/0	t0007	1589	5	0	0	5	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0008	1589	5	0	0	5	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0009	1589	4	4	0	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0010	1589	4	1	3	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0011	1589	1	1	0	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0012	1589	1	0	0	1	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0013	1589	1	0	0	0	0	1	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0014	1589	1	0	0	0	0	1	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0015	1589	1	0	0	0	0	1	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0016	1589	1	1	0	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0017	1589	1	0	0	1	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0018	1589	1	1	0	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0019	1589	1	0	0	1	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0020	1589	1	0	0	1	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0021	1589	1	1	0	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	1/0	t0022	1589	1	0	0	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0023	1589	1	0	0	0	0	1	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0024	1589	1	0	0	1	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0025	1589	1	0	0	1	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	t0026	1589	1	0	1	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM236_chr10_17747201_17805868	0/0	t0001	4460	94	6	19	55	3	11	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0002	4461	54	0	12	30	6	6	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0003	4460	52	4	11	35	0	2	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0004	4463	37	6	7	19	3	2	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0005	4461	30	7	6	9	4	4	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/1	t0006	4462	13	0	7	0	1	4	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0007	4463	9	9	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0008	4460	7	6	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0009	4461	6	6	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0010	4461	6	6	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0011	4461	4	0	0	4	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0012	4461	4	4	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0013	4463	4	3	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0014	4460	4	3	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0015	4460	3	0	0	3	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0016	4461	3	3	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0017	4462	3	3	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0018	4463	3	0	0	0	0	3	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0019	4461	3	3	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0020	4463	3	0	3	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0021	4463	3	2	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0022	4461	2	2	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0023	4461	2	0	2	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0024	4459	2	0	0	0	0	2	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0025	4462	2	2	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0026	4460	2	0	0	1	0	1	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0027	4462	2	0	0	2	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0028	4460	2	0	0	2	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0029	4461	2	2	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0030	4461	2	2	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868