JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM236_chr10_17747201_17805868	0/0	t0031	4463	2	2	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0032	4459	2	0	0	0	0	2	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0033	4460	2	0	2	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0034	4460	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0035	4461	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0036	4461	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0037	4461	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0038	4461	1	0	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0039	4460	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0040	4460	1	0	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0041	4462	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0042	4460	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0043	4460	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0044	4462	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0045	4462	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0046	4460	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0047	4459	1	0	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0048	4460	1	0	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0049	4459	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0050	4460	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	1/0	t0051	4460	1	0	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0052	4460	1	0	0	0	0	1	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0053	4460	1	0	0	0	0	1	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0054	4462	1	0	0	0	0	1	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0055	4460	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0056	4460	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0057	4460	1	0	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0058	4461	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0059	4459	1	0	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0060	4463	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0061	4461	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0062	4463	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0063	4462	1	0	0	0	1	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0064	4481	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0065	4463	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0066	4463	1	0	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0067	4461	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0068	4462	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0069	4464	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0070	4464	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0071	4463	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	t0072	4460	1	0	0	1	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM237_chr2_201615186_201648503	1/1	t0001	4173	387	83	69	176	16	41	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	t0002	4173	14	0	0	14	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	t0003	4173	3	0	3	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	t0004	4173	3	3	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	t0005	4173	2	0	0	1	0	1	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	t0006	4173	2	2	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	t0007	4173	2	2	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	t0008	4172	2	2	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503