JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM237_chr2_201615186_201648503	0/0	t0009	4173	1	0	0	1	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	t0010	4173	1	0	0	1	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	t0011	4172	1	1	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	t0012	4173	1	0	0	1	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	t0013	4173	1	1	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM238L_chr17_10789908_10809099	0/0	t0001	1296	134	4	34	70	11	15	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/1	t0002	1296	79	23	16	33	1	5	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0003	1296	74	16	11	40	2	5	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0004	1296	51	9	5	30	3	4	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	1/0	t0005	1296	43	10	5	22	0	5	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0006	1296	20	2	9	4	1	4	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0007	1296	18	10	3	4	0	1	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0008	1296	15	12	0	0	0	3	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0009	1296	12	0	0	12	0	0	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0010	1296	10	7	2	0	0	1	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0011	1296	8	4	0	1	0	3	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0012	1296	1	1	0	0	0	0	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0013	1296	1	0	1	0	0	0	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0014	1296	1	0	0	1	0	0	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0015	1296	1	0	0	1	0	0	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0016	1296	1	1	0	0	0	0	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	t0017	1296	1	1	0	0	0	0	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238_chr19_55374244_55389292	1/1	t0001	165	327	94	59	110	14	48	copy fasta	TMEM238	chr19	55374244	55389292
TMEM238_chr19_55374244_55389292	0/0	t0002	165	1	0	1	0	0	0	copy fasta	TMEM238	chr19	55374244	55389292
TMEM239_chr20_2811364_2823062	0/1	t0001	1112	132	10	29	68	5	19	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0002	1113	98	3	27	52	4	12	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0003	1113	74	33	2	33	0	6	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	1/0	t0004	1113	54	24	7	15	3	4	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0005	1112	22	16	6	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0006	1113	5	5	0	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0007	1112	4	1	1	2	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0008	1112	3	3	0	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0009	1101	1	0	1	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0010	1113	1	0	0	1	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0011	1113	1	0	1	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0012	1112	1	1	0	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0013	1112	1	1	0	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0014	1087	1	0	0	0	0	1	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0015	1113	1	1	0	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	t0016	1112	1	0	0	1	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM240_chr1_1529778_1545624	1/1	t0001	860	110	15	24	50	8	11	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0002	861	102	12	18	52	3	17	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0003	861	35	28	4	3	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0004	863	24	0	4	15	0	5	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0005	862	20	0	5	11	0	4	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0006	862	19	12	2	3	0	2	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0007	862	13	0	12	0	1	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0008	862	9	1	2	3	2	1	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0009	863	8	3	1	4	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0010	862	7	0	2	5	0	0	copy fasta	TMEM240	chr1	1529778	1545624