JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM240_chr1_1529778_1545624	0/0	t0011	861	7	0	0	6	0	1	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0012	862	6	0	0	5	0	1	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0013	862	6	4	0	2	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0014	861	5	1	2	0	0	2	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0015	862	3	2	0	0	0	1	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0016	860	3	0	0	3	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0017	861	2	2	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0018	861	2	0	0	2	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0019	860	2	0	1	0	1	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0020	861	2	0	2	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0021	861	2	0	2	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0022	861	2	0	0	2	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0023	861	2	1	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0024	862	2	2	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0025	842	2	0	1	0	0	1	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0026	860	2	0	0	1	0	1	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0027	861	2	0	0	2	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0028	861	2	2	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0029	861	2	2	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0030	861	2	2	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0031	861	2	1	1	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0032	860	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0033	862	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0034	863	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0035	862	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0036	863	1	1	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0037	863	1	0	1	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0038	861	1	0	0	0	1	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0039	862	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0040	861	1	0	0	0	0	1	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0041	861	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0042	862	1	0	1	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0043	860	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0044	860	1	1	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0045	860	1	1	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0046	898	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0047	860	1	0	0	0	0	1	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0048	841	1	0	0	0	0	1	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0049	860	1	0	1	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0050	863	1	1	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0051	861	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	t0052	858	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM241_chr18_23291013_23442961	0/0	t0001	2104	106	22	17	55	6	6	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0002	2105	91	17	19	41	3	11	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0003	2103	46	1	13	26	3	3	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	1/0	t0004	2104	22	1	3	8	0	9	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0005	2104	13	1	5	1	1	5	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0006	2103	12	12	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0007	2103	6	4	2	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0008	2103	6	4	1	0	0	1	copy fasta	TMEM241	chr18	23291013	23442961