JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM241_chr18_23291013_23442961	0/0	t0009	2105	4	0	0	4	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0010	2103	3	3	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0011	2105	2	0	1	0	0	1	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0012	2102	2	2	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0013	2101	2	2	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0014	2104	2	2	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/1	t0015	2105	2	1	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0016	2104	2	2	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0017	2105	2	1	1	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0018	2104	1	0	0	0	1	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0019	2103	1	1	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0020	2103	1	1	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0021	2105	1	0	0	0	0	1	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0022	2103	1	1	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0023	2103	1	0	0	0	0	1	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0024	2104	1	0	0	1	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0025	2115	1	1	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0026	2103	1	0	1	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0027	2104	1	0	0	1	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0028	2105	1	0	0	1	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0029	2104	1	0	0	1	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0030	2106	1	0	1	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0031	2105	1	1	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0032	2104	1	0	1	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0033	2103	1	0	0	1	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	t0034	2104	1	0	1	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM242_chr6_157284025_157328519	0/0	t0001	3898	92	19	15	40	3	15	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0002	3893	84	2	18	48	3	13	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/1	t0003	3898	49	17	18	3	4	6	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0004	3897	22	0	0	22	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0005	3899	20	19	1	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0006	3898	10	2	2	2	0	4	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0007	3899	8	8	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0008	3898	6	5	1	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0009	3887	5	0	3	0	0	2	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0010	3902	4	4	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0011	3892	4	0	1	3	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0012	3897	3	1	0	2	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0013	3898	3	3	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0014	3893	3	0	0	3	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0015	3893	3	0	0	3	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0016	3898	2	0	0	2	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0017	3898	2	0	2	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0018	3898	2	2	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0019	3893	2	0	0	2	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0020	3899	2	2	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0021	3899	2	2	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0022	3899	1	0	0	1	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0023	3897	1	0	0	1	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0024	3898	1	1	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519