JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM242_chr6_157284025_157328519	0/0	t0025	3898	1	0	0	0	0	1	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0026	3902	1	1	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0027	3898	1	1	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	1/0	t0028	3897	1	0	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0029	3898	1	1	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0030	3898	1	1	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0031	3893	1	0	0	1	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0032	3893	1	0	0	1	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0033	3893	1	0	0	1	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0034	3893	1	0	1	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0035	3893	1	0	0	1	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0036	3893	1	0	0	0	0	1	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	t0037	3898	1	1	0	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM243_chr7_87191160_87224732	1/1	t0001	706	394	91	66	189	14	32	copy fasta	TMEM243	chr7	87191160	87224732
TMEM243_chr7_87191160_87224732	0/0	t0002	706	3	0	0	3	0	0	copy fasta	TMEM243	chr7	87191160	87224732
TMEM243_chr7_87191160_87224732	0/0	t0003	706	1	0	1	0	0	0	copy fasta	TMEM243	chr7	87191160	87224732
TMEM243_chr7_87191160_87224732	0/0	t0004	706	1	1	0	0	0	0	copy fasta	TMEM243	chr7	87191160	87224732
TMEM243_chr7_87191160_87224732	0/0	t0005	706	1	0	1	0	0	0	copy fasta	TMEM243	chr7	87191160	87224732
TMEM244_chr6_129826244_129866315	1/1	t0001	203	293	77	68	99	10	37	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	t0002	203	85	5	4	63	2	11	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	t0003	203	9	9	0	0	0	0	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	t0004	203	1	1	0	0	0	0	copy fasta	TMEM244	chr6	129826244	129866315
TMEM245_chr9_109010135_109124947	0/0	t0001	5353	45	0	13	25	2	5	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0002	5360	39	0	10	22	2	5	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0003	5359	36	1	7	27	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0004	5358	30	1	3	18	0	8	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0005	5357	24	1	7	14	0	2	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0006	5359	13	0	0	9	1	3	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0007	5361	10	2	0	8	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0008	5359	9	7	1	0	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0009	5356	9	3	2	0	2	2	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0010	5355	8	7	0	0	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0011	5351	8	7	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0012	5354	6	0	3	3	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0013	5359	5	1	0	2	0	2	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0014	5361	5	0	2	2	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0015	5362	4	3	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0016	5358	4	0	0	4	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0017	5351	4	3	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0018	5355	4	0	2	0	1	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0019	5354	4	0	1	3	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0020	5354	4	0	3	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0021	5354	4	0	0	4	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0022	5357	3	3	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0023	5360	3	1	0	1	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0024	5359	3	0	0	3	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0025	5360	3	3	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0026	5359	3	3	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0027	5359	3	0	2	0	1	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0028	5357	3	0	0	2	0	1	copy fasta	TMEM245	chr9	109010135	109124947