JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM245_chr9_109010135_109124947	0/0	t0029	5359	3	0	0	3	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0030	5363	3	0	0	3	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0031	5360	3	0	0	2	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0032	5361	3	0	1	1	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0033	5355	3	2	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0034	5358	3	0	0	3	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0035	5360	2	0	0	2	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0036	5360	2	0	0	2	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0037	5358	2	0	0	2	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0038	5358	2	0	0	1	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0039	5360	2	2	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0040	5359	2	2	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	1/0	t0041	5360	2	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0042	5363	2	0	0	2	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0043	5362	2	0	0	1	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0044	5360	2	0	0	2	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0045	5358	2	2	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0046	5362	2	0	1	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0047	5358	2	0	1	0	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0048	5359	2	0	0	2	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0049	5356	2	0	0	0	0	2	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0050	5354	2	2	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0051	5357	2	2	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0052	5355	2	2	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0053	5356	2	0	0	2	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0054	5351	2	1	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0055	5352	2	2	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0056	5353	2	0	0	0	2	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0057	5353	2	0	0	2	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0058	5357	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0059	5361	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0060	5357	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0061	5359	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0062	5358	1	0	0	0	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0063	5361	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0064	5359	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0065	5361	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0066	5360	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0067	5359	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0068	5361	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0069	5360	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0070	5358	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0071	5357	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0072	5358	1	0	0	0	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0073	5361	1	0	0	0	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0074	5360	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0075	5362	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0076	5361	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0077	5360	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0078	5361	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947