JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM245_chr9_109010135_109124947	0/0	t0079	5360	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0080	5361	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0081	5359	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0082	5358	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0083	5361	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0084	5356	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0085	5355	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0086	5359	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0087	5357	1	0	0	0	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0088	5352	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0089	5352	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0090	5358	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0091	5359	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0092	5358	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0093	5355	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0094	5356	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0095	5350	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0096	5350	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0097	5360	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0098	5357	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0099	5357	1	0	0	0	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0100	5356	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/1	t0101	5358	1	0	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0102	5356	1	0	0	0	1	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0103	5355	1	0	0	0	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0104	5359	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0105	5351	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0106	5356	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0107	5357	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0108	5350	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0109	5359	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0110	5355	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0111	5352	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0112	5355	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0113	5354	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0114	5352	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0115	5353	1	0	0	1	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0116	5357	1	0	0	0	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0117	5358	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0118	5358	1	1	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	t0119	5359	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM248_chr7_66916225_66963551	0/1	t0001	3285	106	22	18	39	9	17	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0002	3287	75	19	14	35	0	7	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0003	3287	55	4	7	34	3	7	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0004	3287	54	1	10	38	2	3	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0005	3287	28	4	4	18	2	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0006	3287	26	0	2	24	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0007	3283	13	13	0	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0008	3286	8	1	4	0	0	3	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0009	3288	7	0	0	7	0	0	copy fasta	TMEM248	chr7	66916225	66963551