JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM248_chr7_66916225_66963551	0/0	t0010	3287	2	0	0	2	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0011	3287	2	2	0	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0012	3287	2	0	0	0	0	2	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0013	3285	2	2	0	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0014	3287	1	0	1	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0015	3287	1	0	1	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0016	3287	1	0	0	1	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0017	3287	1	0	0	0	0	1	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0018	3287	1	0	1	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0019	3287	1	1	0	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0020	3287	1	1	0	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0021	3287	1	0	0	0	0	1	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0022	3287	1	0	1	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0023	3287	1	0	1	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0024	3285	1	0	0	0	0	1	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0025	3285	1	1	0	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0026	3285	1	1	0	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0027	3285	1	0	1	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0028	3285	1	1	0	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0029	3287	1	1	0	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	1/0	t0030	3285	1	0	0	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	t0031	3287	1	0	1	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM249_chr8_144348228_144359931	1/1	t0001	211	368	96	68	146	16	40	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/0	t0002	201	6	0	0	6	0	0	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/0	t0003	211	2	2	0	0	0	0	copy fasta	TMEM249	chr8	144348228	144359931
TMEM250_chr9_136109589_136123875	1/0	t0001	2408	126	27	28	56	5	9	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0002	2408	100	25	14	41	5	15	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/1	t0003	2408	92	2	19	49	6	15	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0004	2408	27	1	3	19	1	3	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0005	2408	15	14	1	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0006	2408	9	0	5	0	0	4	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0007	2400	9	0	0	9	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0008	2408	8	8	0	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0009	2408	6	6	0	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0010	2408	6	5	1	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0011	2426	6	5	1	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0012	2408	5	0	3	0	1	1	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0013	2408	3	0	0	2	0	1	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0014	2409	3	0	0	3	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0015	2408	3	0	0	3	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0016	2408	2	0	0	2	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0017	2408	2	0	0	2	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0018	2408	1	0	0	1	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0019	2408	1	0	0	1	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0020	2408	1	0	0	1	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0021	2408	1	1	0	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0022	2408	1	1	0	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0023	2408	1	0	1	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0024	2408	1	0	0	1	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0025	2408	1	0	1	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875