JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM250_chr9_136109589_136123875	0/0	t0026	2408	1	1	0	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0027	2408	1	1	0	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0028	2408	1	0	1	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM250_chr9_136109589_136123875	0/0	t0029	2408	1	1	0	0	0	0	copy fasta	TMEM250	chr9	136109589	136123875
TMEM252_chr9_68531580_68545883	0/1	t0001	749	318	72	65	136	15	29	copy fasta	TMEM252	chr9	68531580	68545883
TMEM252_chr9_68531580_68545883	0/0	t0002	750	78	13	2	50	2	11	copy fasta	TMEM252	chr9	68531580	68545883
TMEM252_chr9_68531580_68545883	0/0	t0003	750	13	0	4	6	1	2	copy fasta	TMEM252	chr9	68531580	68545883
TMEM252_chr9_68531580_68545883	0/0	t0004	750	7	6	1	0	0	0	copy fasta	TMEM252	chr9	68531580	68545883
TMEM252_chr9_68531580_68545883	0/0	t0005	749	2	2	0	0	0	0	copy fasta	TMEM252	chr9	68531580	68545883
TMEM252_chr9_68531580_68545883	0/0	t0006	750	1	1	0	0	0	0	copy fasta	TMEM252	chr9	68531580	68545883
TMEM252_chr9_68531580_68545883	1/0	t0007	749	1	0	0	0	0	0	copy fasta	TMEM252	chr9	68531580	68545883
TMEM252_chr9_68531580_68545883	0/0	t0008	749	1	0	0	1	0	0	copy fasta	TMEM252	chr9	68531580	68545883
TMEM252_chr9_68531580_68545883	0/0	t0009	725	1	0	0	1	0	0	copy fasta	TMEM252	chr9	68531580	68545883
TMEM253_chr14_21096066_21108724	0/0	t0001	622	187	29	44	81	8	25	copy fasta	TMEM253	chr14	21096066	21108724
TMEM253_chr14_21096066_21108724	1/1	t0002	622	179	34	30	88	3	22	copy fasta	TMEM253	chr14	21096066	21108724
TMEM253_chr14_21096066_21108724	0/0	t0003	622	27	26	0	0	1	0	copy fasta	TMEM253	chr14	21096066	21108724
TMEM253_chr14_21096066_21108724	0/0	t0004	622	1	0	0	0	0	1	copy fasta	TMEM253	chr14	21096066	21108724
TMEM253_chr14_21096066_21108724	0/0	t0005	622	1	0	0	1	0	0	copy fasta	TMEM253	chr14	21096066	21108724
TMEM253_chr14_21096066_21108724	0/0	t0006	622	1	1	0	0	0	0	copy fasta	TMEM253	chr14	21096066	21108724
TMEM254_chr10_80073665_80097551	1/0	t0001	1670	128	25	26	64	3	9	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/1	t0002	1670	108	30	21	40	3	13	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	t0003	1670	97	13	8	63	1	12	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	t0004	1670	38	10	12	8	1	7	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	t0005	1670	6	5	1	0	0	0	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	t0006	1670	4	4	0	0	0	0	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	t0007	1670	2	2	0	0	0	0	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	t0008	1670	1	0	0	0	0	1	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	t0009	1670	1	0	0	1	0	0	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	t0010	1670	1	0	1	0	0	0	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	t0011	1670	1	1	0	0	0	0	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	t0012	1670	1	0	1	0	0	0	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	t0013	1670	1	1	0	0	0	0	copy fasta	TMEM254	chr10	80073665	80097551
TMEM254_chr10_80073665_80097551	0/0	t0014	1670	1	1	0	0	0	0	copy fasta	TMEM254	chr10	80073665	80097551
TMEM255A_chrX_120253650_120316461	0/1	t0001	2373	250	41	46	126	8	28	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0002	2369	10	7	3	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0003	2373	9	8	1	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0004	2373	8	8	0	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0005	2370	4	0	0	4	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0006	2376	4	4	0	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0007	2373	3	0	0	0	1	2	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0008	2373	2	1	1	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0009	2368	2	0	0	2	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0010	2373	2	0	0	2	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0011	2373	2	1	1	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0012	2373	2	2	0	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0013	2373	1	0	1	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	1/0	t0014	2373	1	0	0	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0015	2373	1	0	1	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0016	2373	1	1	0	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	t0017	2373	1	1	0	0	0	0	copy fasta	TMEM255A	chrX	120253650	120316461