JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM255B_chr13_113754226_113821995	0/0	t0151	5137	1	0	1	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0152	5083	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0153	5119	1	0	1	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0154	5137	1	0	1	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0155	5137	1	0	0	1	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0156	5137	1	0	0	0	1	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0157	5137	1	0	0	1	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0158	5137	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0159	5266	1	0	0	0	1	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0160	5441	1	0	0	0	0	1	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0161	5367	1	0	0	0	1	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	1/0	t0162	5137	1	0	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0163	5190	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0164	5597	1	0	1	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0165	5137	1	0	0	0	0	1	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0166	5324	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0167	5065	1	0	0	1	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0168	5137	1	0	0	0	0	1	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0169	5099	1	0	0	0	1	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0170	5197	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0171	5578	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0172	5197	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	t0173	5580	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM256_chr17_7397975_7409097	1/1	t0001	105	398	100	82	158	14	42	copy fasta	TMEM256	chr17	7397975	7409097
TMEM258_chr11_61783949_61797599	1/1	t0001	339	319	87	60	121	17	32	copy fasta	TMEM258	chr11	61783949	61797599
TMEM258_chr11_61783949_61797599	0/0	t0002	339	5	4	1	0	0	0	copy fasta	TMEM258	chr11	61783949	61797599
TMEM258_chr11_61783949_61797599	0/0	t0003	339	2	0	0	2	0	0	copy fasta	TMEM258	chr11	61783949	61797599
TMEM258_chr11_61783949_61797599	0/0	t0004	339	1	0	0	0	1	0	copy fasta	TMEM258	chr11	61783949	61797599
TMEM258_chr11_61783949_61797599	0/0	t0005	339	1	0	1	0	0	0	copy fasta	TMEM258	chr11	61783949	61797599
TMEM258_chr11_61783949_61797599	0/0	t0006	339	1	0	0	1	0	0	copy fasta	TMEM258	chr11	61783949	61797599
TMEM258_chr11_61783949_61797599	0/0	t0007	339	1	1	0	0	0	0	copy fasta	TMEM258	chr11	61783949	61797599
TMEM259_chr19_1004653_1026123	1/1	t0001	825	205	30	43	102	6	22	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0002	825	147	32	29	59	8	19	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0003	825	22	11	6	1	0	4	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0004	825	13	0	0	13	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0005	825	12	12	0	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0006	825	9	7	2	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0007	825	8	0	0	2	2	4	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0008	825	6	6	0	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0009	825	3	1	0	0	1	1	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0010	825	1	1	0	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0011	825	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0012	825	1	0	0	0	1	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0013	825	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	t0014	825	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM25_chr11_118526192_118540829	0/1	t0001	1320	253	73	60	86	7	26	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0002	1312	87	1	3	67	1	15	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0003	1312	8	8	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0004	1312	6	0	0	6	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0005	1320	6	0	4	0	0	2	copy fasta	TMEM25	chr11	118526192	118540829