JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM25_chr11_118526192_118540829	0/0	t0006	1312	6	3	0	3	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	1/0	t0007	1320	6	0	2	0	2	1	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0008	1320	5	5	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0009	1320	3	3	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0010	1320	2	0	1	1	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0011	1320	2	2	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0012	1320	2	0	0	1	0	1	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0013	1312	2	0	0	0	0	2	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0014	1312	1	0	0	1	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0015	1312	1	1	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0016	1320	1	0	1	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0017	1312	1	1	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0018	1320	1	0	1	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0019	1320	1	0	0	1	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0020	1312	1	0	0	1	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0021	1320	1	0	0	0	0	1	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0022	1320	1	0	0	1	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	t0023	1320	1	1	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM260_chr14_56574798_56654515	1/0	t0001	2136	182	40	33	86	5	17	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/1	t0002	2138	55	8	13	17	5	11	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0003	2135	33	0	3	28	1	1	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0004	2135	19	16	3	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0005	2136	12	0	3	7	1	1	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0006	2136	12	12	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0007	2136	8	0	4	4	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0008	2136	7	0	0	7	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0009	2137	6	6	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0010	2138	5	0	0	5	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0011	2134	4	3	1	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0012	2137	4	1	0	0	0	3	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0013	2135	4	0	0	1	0	3	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0014	2135	2	2	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0015	2135	1	1	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0016	2135	1	0	0	0	0	1	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0017	2136	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0018	2135	1	1	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0019	2137	1	0	0	0	0	1	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0020	2136	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0021	2136	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0022	2136	1	0	0	0	0	1	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0023	2136	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0024	2136	1	0	0	0	0	1	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	t0025	2136	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM262_chr11_65083376_65094110	1/1	t0001	159	353	86	68	141	14	42	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	t0002	159	14	0	3	8	1	2	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	t0003	159	12	10	2	0	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	t0004	159	1	0	0	0	1	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	t0005	159	1	0	1	0	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	t0006	181	1	0	0	1	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM263_chr12_106950907_106979035	0/0	t0001	2878	112	13	28	60	4	7	copy fasta	TMEM263	chr12	106950907	106979035