JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM263_chr12_106950907_106979035	1/1	t0002	2878	97	4	19	56	5	11	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0003	2877	83	17	13	47	0	6	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0004	2878	25	6	2	4	3	10	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0005	2878	9	7	1	0	0	1	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0006	2876	8	4	1	0	2	1	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0007	2878	7	0	0	7	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0008	2877	7	6	1	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0009	2879	5	1	0	4	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0010	2880	5	5	0	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0011	2880	5	5	0	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0012	2878	4	4	0	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0013	2877	3	3	0	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0014	2879	2	0	0	2	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0015	2877	2	1	1	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0016	2877	2	0	0	2	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0017	2878	2	0	0	2	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0018	2878	1	0	0	1	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0019	2879	1	0	0	1	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0020	2878	1	1	0	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0021	2878	1	1	0	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0022	2878	1	1	0	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0023	2878	1	0	1	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0024	2878	1	1	0	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0025	2878	1	0	1	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0026	2879	1	1	0	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0027	2879	1	0	0	1	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0028	2879	1	0	0	1	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	t0029	2878	1	1	0	0	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM265_chr16_30735642_30750196	0/1	t0001	1323	266	72	60	85	12	36	copy fasta	TMEM265	chr16	30735642	30750196
TMEM265_chr16_30735642_30750196	1/0	t0002	1323	16	14	1	0	0	0	copy fasta	TMEM265	chr16	30735642	30750196
TMEM265_chr16_30735642_30750196	0/0	t0003	1323	1	0	1	0	0	0	copy fasta	TMEM265	chr16	30735642	30750196
TMEM265_chr16_30735642_30750196	0/0	t0004	1323	1	0	0	1	0	0	copy fasta	TMEM265	chr16	30735642	30750196
TMEM266_chr15_76054985_76209963	0/0	t0001	801	154	61	29	45	6	13	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/1	t0002	801	92	9	20	45	6	11	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	1/0	t0003	801	6	5	0	0	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	t0004	801	5	5	0	0	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	t0005	801	5	0	0	5	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	t0006	801	4	0	0	4	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	t0007	801	2	2	0	0	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	t0008	801	2	2	0	0	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	t0009	801	1	0	0	1	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	t0010	801	1	0	1	0	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	t0011	801	1	1	0	0	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	t0012	801	1	1	0	0	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM267_chr5_43439252_43488865	1/1	t0001	2089	275	66	58	98	12	39	copy fasta	TMEM267	chr5	43439252	43488865
TMEM267_chr5_43439252_43488865	0/0	t0002	2089	15	0	3	12	0	0	copy fasta	TMEM267	chr5	43439252	43488865
TMEM267_chr5_43439252_43488865	0/0	t0003	2089	15	0	1	13	0	1	copy fasta	TMEM267	chr5	43439252	43488865
TMEM267_chr5_43439252_43488865	0/0	t0004	2089	9	2	4	0	2	1	copy fasta	TMEM267	chr5	43439252	43488865
TMEM267_chr5_43439252_43488865	0/0	t0005	2089	6	6	0	0	0	0	copy fasta	TMEM267	chr5	43439252	43488865
TMEM267_chr5_43439252_43488865	0/0	t0006	2089	4	3	1	0	0	0	copy fasta	TMEM267	chr5	43439252	43488865