JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM267_chr5_43439252_43488865	0/0	t0007	2089	3	3	0	0	0	0	copy fasta	TMEM267	chr5	43439252	43488865
TMEM267_chr5_43439252_43488865	0/0	t0008	2089	3	3	0	0	0	0	copy fasta	TMEM267	chr5	43439252	43488865
TMEM267_chr5_43439252_43488865	0/0	t0009	2089	1	1	0	0	0	0	copy fasta	TMEM267	chr5	43439252	43488865
TMEM267_chr5_43439252_43488865	0/0	t0010	2089	1	0	0	0	0	1	copy fasta	TMEM267	chr5	43439252	43488865
TMEM267_chr5_43439252_43488865	0/0	t0011	2089	1	0	1	0	0	0	copy fasta	TMEM267	chr5	43439252	43488865
TMEM267_chr5_43439252_43488865	0/0	t0012	2089	1	0	0	1	0	0	copy fasta	TMEM267	chr5	43439252	43488865
TMEM268_chr9_114606291_114651422	0/0	t0001	3465	122	32	29	46	5	10	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	1/1	t0002	3462	79	7	14	41	4	11	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0003	3465	34	1	2	24	0	7	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0004	3475	27	2	1	23	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0005	3469	17	0	0	17	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0006	3462	11	10	1	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0007	3464	11	2	4	1	2	2	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0008	3469	10	0	8	1	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0009	3463	9	5	3	0	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0010	3468	9	1	2	6	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0011	3453	6	0	0	6	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0012	3469	5	0	0	0	0	5	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0013	3462	5	5	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0014	3468	4	0	0	3	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0015	3462	4	0	3	0	1	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0016	3465	4	4	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0017	3462	4	4	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0018	3465	3	3	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0019	3471	2	0	1	0	1	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0020	3468	2	0	0	2	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0021	3453	2	2	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0022	3463	2	0	0	2	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0023	3474	2	0	1	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0024	3465	2	1	0	0	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0025	3465	2	2	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0026	3465	2	2	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0027	3469	2	2	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0028	3465	1	0	1	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0029	3462	1	1	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0030	3468	1	0	0	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0031	3468	1	0	0	0	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0032	3471	1	0	0	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0033	3471	1	0	0	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0034	3462	1	0	0	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0035	3463	1	0	1	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0036	3462	1	0	0	0	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0037	3462	1	0	0	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0038	3462	1	1	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0039	3462	1	0	0	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0040	3474	1	0	1	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0041	3467	1	0	1	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0042	3465	1	0	1	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0043	3465	1	0	1	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0044	3466	1	0	1	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422