JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM268_chr9_114606291_114651422	0/0	t0045	3465	1	1	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0046	3465	1	0	0	0	1	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0047	3468	1	0	0	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0048	3469	1	1	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0049	3462	1	1	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0050	3464	1	0	0	0	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	t0051	3462	1	0	0	0	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM269_chr1_42779991_42805827	1/1	t0001	2793	104	13	23	52	2	12	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0002	2792	57	5	10	34	3	5	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0003	2792	54	1	5	44	2	2	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0004	2794	45	8	7	25	1	4	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0005	2792	26	12	3	9	0	2	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0006	2793	16	9	0	4	0	3	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0007	2793	16	9	3	0	1	3	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0008	2797	14	0	7	0	2	5	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0009	2798	10	0	4	1	1	4	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0010	2795	8	3	1	3	0	1	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0011	2797	5	1	2	0	2	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0012	2782	4	0	0	4	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0013	2791	4	0	2	2	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0014	2792	4	4	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0015	2793	4	4	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0016	2793	3	0	1	2	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0017	2793	3	3	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0018	2794	3	3	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0019	2793	2	2	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0020	2791	2	0	0	0	0	2	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0021	2792	2	2	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0022	2794	2	2	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0023	2793	2	2	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0024	2795	1	1	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0025	2794	1	1	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0026	2798	1	1	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0027	2791	1	0	0	1	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0028	2792	1	0	0	1	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0029	2792	1	0	0	1	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0030	2792	1	0	0	1	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0031	2793	1	0	0	1	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0032	2793	1	1	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0033	2793	1	1	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0034	2793	1	0	0	1	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0035	2793	1	1	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0036	2794	1	1	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0037	2794	1	0	0	1	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0038	2794	1	0	0	0	0	1	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0039	2795	1	0	1	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0040	2797	1	0	0	0	0	1	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0041	2793	1	0	0	0	0	1	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0042	2793	1	0	0	1	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	t0043	2794	1	0	1	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827