JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM26_chr10_61401642_61458381	1/1	t0001	3981	131	16	32	58	6	17	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0002	3981	70	3	10	48	3	6	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0003	3981	36	22	5	6	0	3	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0004	3981	27	6	1	16	2	2	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0005	3981	20	18	2	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0006	3981	10	0	4	4	0	2	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0007	3982	5	0	0	4	0	1	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0008	3981	5	3	2	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0009	3981	5	5	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0010	3981	3	0	0	3	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0011	3981	3	3	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0012	3981	3	0	2	1	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0013	3981	3	3	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0014	3981	2	0	0	2	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0015	3981	2	0	0	2	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0016	3981	2	1	1	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0017	3981	2	0	1	0	1	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0018	3981	1	0	1	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0019	3981	1	0	0	0	0	1	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0020	3981	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0021	3981	1	0	0	0	0	1	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0022	3981	1	0	0	1	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0023	3981	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0024	3981	1	0	0	0	0	1	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0025	3981	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0026	3981	1	0	1	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0027	3981	1	0	0	1	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0028	3981	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0029	3981	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0030	3981	1	0	0	1	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0031	3982	1	0	0	1	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0032	3981	1	0	0	1	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0033	3981	1	0	1	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0034	3981	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0035	3981	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0036	3981	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0037	3981	1	0	1	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0038	3981	1	0	0	0	0	1	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0039	3981	1	0	1	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0040	3981	1	0	1	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0041	3981	1	0	0	0	0	1	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0042	3981	1	0	0	1	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0043	3981	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0044	3981	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0045	3981	1	0	0	0	0	1	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	t0046	3981	1	0	0	0	0	1	copy fasta	TMEM26	chr10	61401642	61458381
TMEM270_chr7_73856159_73870890	0/1	t0001	54	189	33	47	81	3	24	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	1/0	t0002	54	168	49	31	61	5	21	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	t0003	54	5	5	0	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	t0004	54	4	3	0	0	0	1	copy fasta	TMEM270	chr7	73856159	73870890