JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM271_chr4_568880_581295	1/1	t0001	1259	139	34	31	54	3	15	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0002	1259	74	1	19	41	5	8	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0003	1252	53	4	3	40	3	3	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0004	1255	30	20	3	4	0	3	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0005	1258	17	9	1	6	0	1	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0006	1262	8	0	0	8	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0007	1255	4	1	1	0	1	1	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0008	1260	3	0	0	3	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0009	1256	3	2	0	1	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0010	1251	3	3	0	0	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0011	1259	2	1	0	1	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0012	1260	2	1	1	0	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0013	1262	2	0	0	2	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0014	1258	2	2	0	0	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0015	1251	2	2	0	0	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0016	1255	2	2	0	0	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0017	1253	2	0	0	2	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0018	1258	1	1	0	0	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0019	1259	1	0	1	0	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0020	1255	1	1	0	0	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	t0021	1246	1	0	0	0	0	1	copy fasta	TMEM271	chr4	568880	581295
TMEM272_chr13_51808347_51850177	1/0	t0001	3590	116	8	12	75	6	14	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0002	3590	84	6	15	51	2	10	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/1	t0003	3590	64	20	19	13	3	8	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0004	3590	25	0	0	25	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0005	3590	11	0	8	0	0	3	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0006	3598	10	2	8	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0007	3590	10	9	1	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0008	3590	7	7	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0009	3592	6	0	0	6	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0010	3590	6	2	3	0	1	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0011	3590	6	6	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0012	3590	6	1	5	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0013	3594	5	5	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0014	3590	5	1	1	0	1	2	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0015	3590	5	0	5	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0016	3586	5	0	0	1	0	4	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0017	3590	4	0	0	0	2	2	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0018	3589	4	0	2	0	2	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0019	3590	4	4	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0020	3590	4	4	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0021	3590	3	3	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0022	3590	2	1	1	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0023	3592	2	0	1	0	1	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0024	3590	2	0	0	1	0	1	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0025	3590	2	2	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0026	3590	2	1	0	1	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0027	3590	2	0	2	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0028	3588	2	1	0	0	0	1	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0029	3590	2	0	0	2	0	0	copy fasta	TMEM272	chr13	51808347	51850177