JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM272_chr13_51808347_51850177	0/0	t0030	3600	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0031	3594	1	0	1	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0032	3592	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0033	3592	1	0	0	1	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0034	3590	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0035	3590	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0036	3590	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0037	3590	1	0	0	1	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0038	3590	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0039	3590	1	0	0	1	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0040	3590	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0041	3590	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0042	3590	1	0	0	0	0	1	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0043	3590	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0044	3590	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0045	3590	1	0	1	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0046	3590	1	0	0	1	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0047	3580	1	0	0	1	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0048	3590	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0049	3590	1	0	0	1	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0050	3590	1	0	0	0	0	1	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0051	3588	1	0	1	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0052	3586	1	0	0	0	0	1	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0053	3590	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0054	3590	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	t0055	3590	1	0	0	1	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM273_chr10_49149736_49193391	1/0	t0001	1212	167	37	30	80	9	10	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/1	t0002	1210	84	8	22	40	3	10	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0003	1212	43	13	7	12	2	9	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0004	1210	28	12	8	1	1	6	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0005	1212	9	8	1	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0006	1212	7	7	0	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0007	1210	6	0	1	0	3	2	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0008	1210	4	3	0	0	0	1	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0009	1212	3	3	0	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0010	1212	2	1	1	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0011	1212	1	0	0	1	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0012	1212	1	1	0	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0013	1212	1	0	0	1	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0014	1212	1	0	0	0	0	1	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0015	1212	1	0	1	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0016	1210	1	1	0	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0017	1212	1	0	1	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0018	1210	1	0	0	0	0	1	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	t0019	1210	1	0	0	1	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM275_chr1_46527166_46540515	1/0	t0001	1589	173	16	14	118	2	22	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0002	1579	108	14	18	60	4	12	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/1	t0003	1589	61	14	25	3	9	9	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0004	1579	30	9	9	11	0	1	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0005	1589	16	15	0	1	0	0	copy fasta	TMEM275	chr1	46527166	46540515