JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM275_chr1_46527166_46540515	0/0	t0006	1589	13	13	0	0	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0007	1579	12	11	1	0	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0008	1589	8	0	2	3	0	3	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0009	1589	4	4	0	0	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0010	1589	2	0	1	0	0	1	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0011	1589	2	0	1	0	1	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0012	1589	1	0	0	1	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0013	1589	1	0	1	0	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0014	1579	1	0	0	1	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0015	1543	1	1	0	0	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	t0016	1579	1	1	0	0	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM276_chr8_144458825_144470492	0/1	t0001	638	328	73	68	134	12	40	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	1/0	t0002	638	55	5	5	44	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	t0003	638	8	8	0	0	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	t0004	638	7	0	6	0	1	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	t0005	638	3	3	0	0	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	t0006	638	1	1	0	0	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	t0007	638	1	1	0	0	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	t0008	638	1	0	1	0	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	t0009	638	1	0	0	1	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	t0010	638	1	0	0	1	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	t0011	638	1	1	0	0	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	t0012	638	1	0	0	0	1	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM30A_chr6_75247924_75289792	0/1	t0001	3333	198	58	31	76	7	25	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0002	3354	33	0	1	32	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	1/0	t0003	3333	16	4	0	2	1	8	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0004	3333	10	9	1	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0005	3333	6	4	2	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0006	3333	4	0	3	0	1	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0007	3333	2	2	0	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0008	3333	2	2	0	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0009	3354	2	0	0	1	0	1	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0010	3354	1	0	0	1	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0011	3333	1	1	0	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0012	3333	1	1	0	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0013	3333	1	0	1	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0014	3333	1	1	0	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0015	3333	1	1	0	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0016	3333	1	0	0	0	1	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0017	3333	1	0	1	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	t0018	3333	1	1	0	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30B_chr14_61272370_61286338	0/0	t0001	2926	63	2	14	37	6	4	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0002	2912	45	34	3	8	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0003	2924	45	1	13	25	1	5	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0004	2906	42	3	7	27	1	4	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	1/0	t0005	2914	33	4	12	11	1	4	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0006	2922	22	2	7	8	2	3	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0007	2908	19	11	0	8	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0008	2920	19	0	0	19	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0009	2918	17	0	0	16	0	1	copy fasta	TMEM30B	chr14	61272370	61286338