JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM30B_chr14_61272370_61286338	0/0	t0010	2928	16	0	1	11	1	3	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0011	2920	14	2	1	8	0	3	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0012	2914	13	11	0	2	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0013	2916	8	0	0	3	0	5	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0014	2918	6	0	0	5	0	1	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0015	2910	5	3	0	1	1	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0016	2916	5	2	2	1	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0017	2914	5	0	3	0	0	2	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0018	2922	5	0	0	5	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0019	2930	5	0	0	5	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0020	2914	5	5	0	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0021	2914	4	4	0	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0022	2906	3	0	0	3	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0023	2912	3	3	0	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0024	2914	3	0	0	3	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0025	2918	3	0	3	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0026	2924	3	0	0	3	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0027	2932	3	0	0	3	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0028	2910	3	3	0	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0029	2906	2	0	2	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0030	2906	2	0	0	0	2	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0031	2908	2	1	0	1	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0032	2910	2	2	0	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0033	2912	2	1	0	1	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0034	2914	2	0	0	2	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0035	2912	2	0	2	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/1	t0036	2924	2	0	1	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0037	2914	1	0	1	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0038	2914	1	0	1	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0039	2906	1	0	1	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0040	2902	1	1	0	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0041	2912	1	1	0	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0042	2916	1	0	0	0	0	1	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0043	2922	1	0	0	1	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0044	2926	1	0	1	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0045	2926	1	0	0	0	0	1	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0046	2926	1	0	0	0	1	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0047	2926	1	0	0	0	0	1	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0048	2930	1	0	1	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0049	2908	1	0	0	1	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0050	2918	1	1	0	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	t0051	2916	1	1	0	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM31_chrX_103705909_103719032	1/1	t0001	226	310	72	60	139	9	28	copy fasta	TMEM31	chrX	103705909	103719032
TMEM31_chrX_103705909_103719032	0/0	t0002	222	3	0	0	3	0	0	copy fasta	TMEM31	chrX	103705909	103719032
TMEM31_chrX_103705909_103719032	0/0	t0003	225	1	0	0	1	0	0	copy fasta	TMEM31	chrX	103705909	103719032
TMEM33_chr4_41930429_41965803	0/1	t0001	6662	65	7	21	20	3	13	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0002	6663	16	8	6	1	0	1	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0003	6664	15	1	5	5	0	4	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0004	6662	13	11	0	0	0	2	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0005	6663	9	7	2	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803