JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM33_chr4_41930429_41965803	0/0	t0006	6661	8	8	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0007	6667	8	8	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0008	6655	6	0	4	0	0	2	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0009	6664	5	4	1	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0010	6665	3	3	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	1/0	t0011	6661	3	2	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0012	6664	3	3	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0013	6662	3	0	2	0	1	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0014	6664	2	1	0	0	1	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0015	6662	2	1	1	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0016	6659	2	2	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0017	6662	2	2	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0018	6661	2	1	1	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0019	6665	2	0	0	0	0	2	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0020	6662	2	2	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0021	6662	1	0	1	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0022	6665	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0023	6178	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0024	6179	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0025	6179	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0026	6654	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0027	6655	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0028	6660	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0029	6663	1	0	0	0	1	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0030	6665	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0031	6667	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0032	6655	1	0	0	0	0	1	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0033	6654	1	0	1	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0034	6661	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0035	6664	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0036	6664	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0037	6662	1	0	0	1	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0038	6662	1	0	0	0	0	1	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0039	6650	1	0	0	0	0	1	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0040	6664	1	0	0	0	0	1	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0041	6662	1	0	0	1	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0042	6689	1	0	0	1	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0043	6691	1	0	0	1	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0044	6680	1	0	1	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0045	6682	1	0	0	0	0	1	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0046	6685	1	0	0	0	0	1	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	t0047	6678	1	1	0	0	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM35A_chrX_101073879_101101367	0/0	t0001	1534	117	14	18	69	2	14	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/1	t0002	1535	47	1	19	17	4	5	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0003	1533	42	8	8	13	3	10	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0004	1534	10	10	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0005	1536	10	1	0	9	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0006	1534	9	0	0	9	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0007	1535	9	0	0	9	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0008	1528	9	9	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367