JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM35A_chrX_101073879_101101367	1/0	t0009	1536	7	1	1	1	0	3	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0010	1534	6	6	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0011	1537	6	0	3	3	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0012	1535	5	0	5	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0013	1529	5	5	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0014	1536	4	4	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0015	1532	3	2	0	1	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0016	1531	3	2	0	0	0	1	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0017	1534	3	3	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0018	1532	2	2	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0019	1534	2	2	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0020	1535	2	0	0	1	1	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0021	1534	2	0	2	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0022	1535	2	1	0	0	0	1	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0023	1536	2	0	0	2	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0024	1537	1	0	0	1	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0025	1531	1	1	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0026	1536	1	0	0	0	1	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0027	1538	1	0	0	1	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0028	1537	1	0	0	1	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0029	1534	1	1	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0030	1533	1	1	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0031	1540	1	0	0	1	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0032	1536	1	0	1	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0033	1538	1	0	0	1	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0034	1539	1	0	0	1	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0035	1532	1	1	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0036	1526	1	1	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0037	1534	1	1	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	t0038	1534	1	1	0	0	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35B_chr1_34976380_34990347	1/1	t0001	607	224	17	53	107	12	33	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM35B_chr1_34976380_34990347	0/0	t0002	607	160	59	11	83	2	5	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM35B_chr1_34976380_34990347	0/0	t0003	607	15	13	1	1	0	0	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM35B_chr1_34976380_34990347	0/0	t0004	607	9	8	1	0	0	0	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM35B_chr1_34976380_34990347	0/0	t0005	607	3	3	0	0	0	0	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM35B_chr1_34976380_34990347	0/0	t0006	607	1	0	0	1	0	0	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM37_chr2_119426854_119443504	0/0	t0001	1111	227	32	49	118	9	19	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0002	1116	83	10	8	48	6	11	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/1	t0003	1116	43	4	13	18	1	6	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0004	1116	20	20	0	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0005	1116	12	11	1	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0006	1111	6	0	2	2	0	2	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0007	1116	6	2	1	0	0	3	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0008	1111	6	2	0	3	0	1	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0009	1116	4	3	1	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0010	1116	4	4	0	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0011	1116	2	0	0	2	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0012	1116	2	2	0	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0013	1111	2	0	0	0	0	2	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0014	1111	1	0	1	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504