JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM37_chr2_119426854_119443504	0/0	t0015	1111	1	1	0	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0016	1116	1	0	1	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0017	1116	1	0	0	0	0	1	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0018	1116	1	0	0	1	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0019	1111	1	0	0	1	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0020	1116	1	1	0	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0021	1089	1	0	0	1	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0022	1111	1	0	0	1	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0023	1124	1	1	0	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0024	1111	1	0	0	1	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0025	1116	1	0	0	0	0	1	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	1/0	t0026	1115	1	0	0	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0027	1111	1	1	0	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	t0028	1111	1	0	1	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM38A_chr19_16656139_16695023	0/1	t0001	1733	98	0	25	54	5	13	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0002	1732	67	13	10	38	2	4	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0003	1731	30	19	1	6	0	4	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0004	1728	28	26	2	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0005	1732	25	5	10	8	0	2	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0006	1737	18	17	1	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0007	1728	15	4	4	0	1	6	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0008	1733	7	0	2	0	0	5	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0009	1733	5	0	0	5	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0010	1732	5	0	2	1	0	2	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0011	1736	3	3	0	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0012	1734	3	0	0	2	0	1	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0013	1731	3	0	0	3	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0014	1736	2	2	0	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0015	1736	2	2	0	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0016	1731	2	0	0	2	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0017	1734	2	0	1	0	1	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0018	1733	2	0	1	0	1	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0019	1733	2	0	0	2	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0020	1732	2	0	0	2	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0021	1742	1	1	0	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0022	1739	1	0	1	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0023	1734	1	0	0	1	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0024	1734	1	0	1	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0025	1733	1	0	0	0	0	1	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0026	1733	1	0	0	1	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0027	1731	1	1	0	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0028	1728	1	1	0	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	1/0	t0029	1732	1	0	0	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0030	1772	1	0	0	1	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	t0031	1733	1	0	1	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38B_chr9_105689541_105781629	1/1	t0001	2670	111	15	23	55	4	12	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0002	2669	86	12	10	58	0	6	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0003	2670	64	21	18	21	2	2	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0004	2669	18	13	3	0	0	2	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0005	2669	12	0	4	8	0	0	copy fasta	TMEM38B	chr9	105689541	105781629