JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM38B_chr9_105689541_105781629	0/0	t0006	2670	11	0	2	9	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0007	2669	8	8	0	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0008	2670	6	0	3	3	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0009	2669	6	5	1	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0010	2669	5	3	1	0	0	1	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0011	2671	5	5	0	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0012	2669	4	3	1	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0013	2670	3	3	0	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0014	2668	3	0	0	0	0	3	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0015	2670	2	0	0	2	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0016	2670	1	0	0	1	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0017	2670	1	0	0	1	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0018	2670	1	0	0	1	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0019	2669	1	1	0	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0020	2669	1	1	0	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0021	2669	1	0	0	1	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0022	2669	1	0	0	1	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0023	2670	1	0	0	1	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0024	2671	1	1	0	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0025	2669	1	1	0	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0026	2670	1	0	0	1	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	t0027	2670	1	0	0	1	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM39A_chr3_119423949_119468615	1/1	t0001	3387	152	23	33	75	6	13	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0002	3387	64	10	4	43	1	6	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0003	3387	56	1	15	31	2	7	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0004	3387	49	9	10	15	4	11	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0005	3387	45	33	3	9	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0006	3387	12	2	0	1	0	9	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0007	3387	5	0	3	0	1	1	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0008	3391	3	3	0	0	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0009	3391	3	3	0	0	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0010	3387	2	2	0	0	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0011	3387	2	0	0	2	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0012	3387	1	0	0	1	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0013	3387	1	1	0	0	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0014	3387	1	0	0	1	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0015	3387	1	0	0	0	0	1	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0016	3387	1	0	1	0	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0017	3387	1	1	0	0	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	t0018	3387	1	0	1	0	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39B_chr1_32067939_32107863	1/1	t0001	300	331	85	61	137	10	36	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM39B_chr1_32067939_32107863	0/0	t0002	300	3	0	0	3	0	0	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM39B_chr1_32067939_32107863	0/0	t0003	300	1	0	1	0	0	0	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM39B_chr1_32067939_32107863	0/0	t0004	300	1	1	0	0	0	0	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM40_chr3_12728528_12764259	0/1	t0001	1324	118	56	28	17	7	9	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	1/0	t0002	1324	112	6	12	72	2	19	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0003	1322	71	9	22	31	2	7	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0004	1323	15	15	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0005	1324	8	4	4	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0006	1324	5	0	0	5	0	0	copy fasta	TMEM40	chr3	12728528	12764259