JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM40_chr3_12728528_12764259	0/0	t0007	1323	3	1	1	0	1	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0008	1322	2	2	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0009	1323	2	2	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0010	1323	1	1	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0011	1322	1	1	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0012	1322	1	0	0	1	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0013	1323	1	1	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0014	1324	1	0	0	0	0	1	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0015	1324	1	0	1	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0016	1324	1	1	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	t0017	1323	1	1	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM41A_chr3_185484601_185504035	1/0	t0001	2011	201	44	33	97	8	18	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/1	t0002	2012	141	36	28	44	7	25	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0003	2011	18	0	6	12	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0004	2011	6	0	0	6	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0005	2011	5	1	1	3	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0006	2011	3	1	1	0	1	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0007	2012	3	0	0	3	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0008	2012	2	0	2	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0009	2011	2	2	0	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0010	2011	1	0	1	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0011	2011	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0012	2012	1	1	0	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0013	2012	1	1	0	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0014	2012	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0015	2011	1	1	0	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0016	2011	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0017	2011	1	1	0	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0018	2011	1	1	0	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0019	2011	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0020	2011	1	0	0	0	0	1	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0021	2011	1	1	0	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0022	2011	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0023	2011	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	t0024	2011	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41B_chr11_9275654_9319593	0/0	t0001	2922	109	13	23	57	3	13	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/1	t0002	2922	102	18	12	52	2	17	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0003	2921	24	4	11	1	5	3	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0004	2921	20	17	3	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0005	2923	17	0	2	15	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0006	2923	9	7	2	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0007	2922	8	7	1	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0008	2922	7	0	2	0	0	5	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0009	2922	7	0	0	7	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0010	2924	7	0	7	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0011	2921	7	6	1	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0012	2922	6	0	0	5	0	1	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0013	2923	6	6	0	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0014	2921	5	3	0	1	0	1	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0015	2923	5	0	2	0	0	3	copy fasta	TMEM41B	chr11	9275654	9319593