JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM41B_chr11_9275654_9319593	0/0	t0016	2923	3	1	0	1	0	1	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0017	2922	3	3	0	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0018	2922	2	2	0	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0019	2366	2	1	1	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0020	2921	1	0	1	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0021	2922	1	1	0	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0022	2922	1	0	0	1	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0023	2923	1	0	1	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0024	2922	1	0	0	1	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0025	2921	1	0	1	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0026	2922	1	0	1	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0027	2921	1	0	0	1	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0028	2921	1	1	0	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0029	2922	1	0	0	1	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0030	2922	1	0	1	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0031	2922	1	0	0	1	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0032	2922	1	0	0	1	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0033	2922	1	0	0	0	0	1	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0034	2922	1	0	0	0	0	1	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0035	2922	1	0	0	0	0	1	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0036	2922	1	0	0	1	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0037	2922	1	1	0	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0038	2922	1	0	0	0	0	1	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	t0039	2922	1	1	0	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	1/0	t0040	2923	1	0	0	0	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM42_chr3_44856912_44870664	0/1	t0001	498	327	71	67	142	11	35	copy fasta	TMEM42	chr3	44856912	44870664
TMEM42_chr3_44856912_44870664	1/0	t0002	498	48	27	13	0	3	4	copy fasta	TMEM42	chr3	44856912	44870664
TMEM42_chr3_44856912_44870664	0/0	t0003	498	6	0	0	6	0	0	copy fasta	TMEM42	chr3	44856912	44870664
TMEM42_chr3_44856912_44870664	0/0	t0004	498	3	0	0	0	0	3	copy fasta	TMEM42	chr3	44856912	44870664
TMEM42_chr3_44856912_44870664	0/0	t0005	498	1	0	0	0	0	1	copy fasta	TMEM42	chr3	44856912	44870664
TMEM42_chr3_44856912_44870664	0/0	t0006	498	1	0	0	0	0	1	copy fasta	TMEM42	chr3	44856912	44870664
TMEM43_chr3_14120052_14148680	0/1	t0001	2028	142	34	35	47	4	21	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	1/0	t0002	2028	110	19	25	47	2	16	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0003	2023	45	11	1	30	0	3	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0004	2023	34	0	4	30	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0005	2028	23	1	14	0	5	3	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0006	2028	13	11	0	0	0	2	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0007	2028	6	6	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0008	2028	4	4	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0009	2028	3	3	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0010	2023	3	3	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0011	2028	3	0	0	3	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0012	2028	2	0	0	0	1	1	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0013	2028	2	0	0	2	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0014	2028	2	2	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0015	2028	2	0	0	2	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0016	2028	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0017	2028	1	0	1	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0018	2028	1	1	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0019	2028	1	1	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680