JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM43_chr3_14120052_14148680	0/0	t0020	2028	1	1	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0021	2028	1	1	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0022	2028	1	1	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0023	2023	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0024	2023	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0025	2028	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0026	2028	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	t0027	2028	1	1	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM44_chr3_194582678_194638419	0/0	t0001	1056	177	35	33	76	9	24	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0002	1056	68	16	12	32	0	8	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0003	1056	29	0	1	28	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0004	1056	29	10	7	9	0	3	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	1/0	t0005	1056	22	3	10	5	2	1	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0006	1057	20	13	3	0	0	4	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0007	1056	6	0	0	6	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0008	1056	6	0	3	2	0	1	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/1	t0009	1056	5	0	4	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0010	1056	5	2	0	1	0	2	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0011	1056	4	2	2	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0012	1056	4	3	1	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0013	1056	4	1	0	0	0	3	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0014	1056	3	0	1	0	0	2	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0015	1057	3	3	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0016	1056	2	2	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0017	1056	2	0	1	0	1	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0018	1056	1	0	0	1	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0019	1056	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0020	1056	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0021	1057	1	0	1	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0022	1057	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0023	1056	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0024	1056	1	0	0	1	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0025	1056	1	0	0	1	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0026	1057	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0027	1056	1	0	0	1	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0028	1057	1	0	1	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0029	1056	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0030	1056	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0031	1056	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	t0032	1056	1	0	0	1	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM45A_chr3_100487619_100582444	1/1	t0001	740	113	7	26	58	4	16	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	t0002	746	94	17	15	56	2	4	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	t0003	742	33	18	9	0	0	6	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	t0004	740	26	7	5	6	0	8	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	t0005	746	14	2	0	11	1	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	t0006	741	11	10	1	0	0	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	t0007	747	9	8	1	0	0	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	t0008	748	7	4	2	1	0	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	t0009	743	6	1	4	0	1	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	t0010	747	3	3	0	0	0	0	copy fasta	TMEM45A	chr3	100487619	100582444