JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM45A_chr3_100487619_100582444	0/0	t0011	741	2	2	0	0	0	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	t0012	747	2	2	0	0	0	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	t0013	748	1	1	0	0	0	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	t0014	742	1	0	1	0	0	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45B_chr11_129810848_129865003	1/0	t0001	1378	179	41	34	82	6	15	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0002	1378	84	6	13	61	0	4	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0003	1378	56	17	11	13	3	12	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/1	t0004	1378	48	5	9	24	5	4	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0005	1378	8	7	1	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0006	1379	5	5	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0007	1378	5	5	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0008	1377	3	0	0	3	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0009	1378	3	3	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0010	1378	2	2	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0011	1378	2	0	2	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0012	1378	2	2	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0013	1378	1	0	1	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0014	1378	1	1	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0015	1378	1	0	0	1	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0016	1378	1	1	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0017	1378	1	1	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0018	1378	1	0	0	0	0	1	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	t0019	1378	1	0	1	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM47_chrX_34622075_34662285	1/0	t0001	3495	156	34	32	66	7	16	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/1	t0002	3495	82	7	17	50	0	7	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0003	3497	10	8	1	1	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0004	3496	7	3	1	3	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0005	3495	6	6	0	0	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0006	3495	5	5	0	0	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0007	3495	3	3	0	0	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0008	3495	3	3	0	0	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0009	3496	2	0	0	0	0	2	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0010	3495	2	0	0	0	0	2	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0011	3499	1	0	0	1	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0012	3494	1	0	0	1	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0013	3495	1	0	0	0	0	1	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0014	3496	1	0	0	1	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0015	3495	1	0	0	1	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0016	3495	1	0	0	1	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0017	3495	1	0	0	1	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0018	3495	1	0	0	1	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	t0019	3495	1	1	0	0	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM50A_chr1_25333334_25367361	0/0	t0001	1793	173	57	28	67	8	13	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/1	t0002	1793	144	7	27	78	7	24	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	1/0	t0003	1793	25	20	4	0	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0004	1793	5	0	3	0	0	2	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0005	1793	5	0	2	0	1	2	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0006	1793	4	0	0	4	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0007	1793	3	0	0	3	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0008	1793	3	2	1	0	0	0	copy fasta	TMEM50A	chr1	25333334	25367361