JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM50A_chr1_25333334_25367361	0/0	t0009	1793	2	0	0	2	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0010	1793	2	0	0	0	0	2	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0011	1793	2	2	0	0	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0012	1793	2	1	1	0	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0013	1793	2	0	0	0	2	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0014	1793	1	0	0	1	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0015	1793	1	0	0	0	0	1	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0016	1793	1	0	1	0	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0017	1793	1	0	1	0	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0018	1793	1	1	0	0	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0019	1793	1	1	0	0	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0020	1783	1	0	0	1	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	t0021	1793	1	1	0	0	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50B_chr21_33444141_33484974	0/0	t0001	1854	162	62	28	51	6	15	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/1	t0002	1856	55	14	13	12	5	10	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0003	1852	55	1	17	32	3	2	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0004	1858	53	0	8	33	3	9	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0005	1854	30	1	6	17	1	5	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0006	1854	6	5	1	0	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0007	1848	3	3	0	0	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0008	1854	2	0	0	2	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0009	1852	2	0	0	2	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0010	1854	2	2	0	0	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0011	1854	2	0	0	1	0	1	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0012	1858	1	0	1	0	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0013	1854	1	1	0	0	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0014	1854	1	1	0	0	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0015	1863	1	0	0	1	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0016	1854	1	1	0	0	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0017	1854	1	1	0	0	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	t0018	1854	1	0	0	1	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM51_chr1_15148747_15225478	0/1	t0001	1209	93	23	20	35	6	8	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0002	1209	27	0	1	23	0	3	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0003	1210	24	1	10	9	0	4	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0004	1210	18	5	3	5	1	4	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0005	1208	16	1	3	1	5	6	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0006	1209	14	7	2	0	0	5	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0007	1209	10	0	8	1	1	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0008	1208	8	1	3	1	2	1	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0009	1210	7	6	0	0	1	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0010	1209	7	6	0	1	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0011	1209	6	2	1	3	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	1/0	t0012	1210	6	3	0	0	1	1	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0013	1209	5	5	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0014	1209	5	4	1	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0015	1209	4	2	2	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0016	1210	4	4	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0017	1210	3	3	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0018	1210	3	0	0	3	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0019	1209	3	0	0	3	0	0	copy fasta	TMEM51	chr1	15148747	15225478