JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM51_chr1_15148747_15225478	0/0	t0020	1209	3	0	3	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0021	1210	2	2	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0022	1209	2	0	1	1	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0023	1209	2	0	1	1	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0024	1208	2	1	0	0	1	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0025	1209	2	0	0	2	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0026	1209	2	0	0	2	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0027	1209	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0028	1209	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0029	1208	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0030	1208	1	0	0	0	0	1	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0031	1209	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0032	1208	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0033	1209	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0034	1209	1	0	1	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0035	1208	1	0	0	0	0	1	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0036	1209	1	0	0	0	0	1	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0037	1210	1	0	0	1	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0038	1210	1	0	0	1	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0039	1208	1	0	0	1	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0040	1209	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0041	1210	1	0	0	0	0	1	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0042	1208	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0043	1209	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0044	1209	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0045	1210	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	t0046	1209	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM52B_chr12_10174032_10196804	0/1	t0001	2208	190	34	50	68	11	26	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0002	2207	104	0	12	79	0	13	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0003	2208	60	7	2	43	1	7	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	1/0	t0004	2208	22	19	0	0	2	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0005	2213	9	1	2	1	4	1	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0006	2206	8	7	1	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0007	2208	7	6	1	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0008	2208	5	4	0	0	0	1	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0009	2208	3	3	0	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0010	2208	3	1	2	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0011	2206	3	1	2	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0012	2208	2	2	0	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0013	2208	2	0	1	0	0	1	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0014	2208	2	0	1	1	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0015	2206	2	2	0	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0016	2208	1	0	0	0	0	1	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0017	2208	1	0	1	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0018	2208	1	0	0	1	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0019	2208	1	1	0	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0020	2208	1	1	0	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0021	2208	1	0	1	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0022	2207	1	0	0	1	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	t0023	2206	1	1	0	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804